Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_H13
(998 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.027
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.027
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.25
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.34
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 28 1.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 22 6.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.2
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 9.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 9.5
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 9.5
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.3 bits (75), Expect = 0.027
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 88 PPPPXXXXXGPPXXXXGXXXGGXPPPPPP 174
PPPP G P G PPPPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 29.9 bits (64), Expect = 0.59
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 87 PPPPXXXXXGXPPXXXXXXXXGGXPPPPP 173
PPPP G PP PPPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +1
Query: 157 PPPPPPXXXXGXPPPXXXXXXXXGGXXKKKXXPXPPPP 270
PPPPPP PP G P PPPP
Sbjct: 312 PPPPPPSRRNRGKPP------IGNGSSNSSLPPPPPPP 343
Score = 28.7 bits (61), Expect = 1.4
Identities = 19/77 (24%), Positives = 19/77 (24%)
Frame = +3
Query: 87 PPPPXXXXXGXPPXXXXXXXXGGXPPPPPXXXXGXPPPXXXXXXXXXGXXXKKXXXXPPP 266
PPP G P PP PP G P P P
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP---ALPPLGNASRTSTPPVPTP 420
Query: 267 PXXXXXPPPXXPXXXPP 317
P PP P PP
Sbjct: 421 PSLPPSAPPSLPPSAPP 437
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 89 PPPXXXXXGXPPXXXXGXXXGGXPPPPPXXXXGXXPPP 202
PPP G P G PPP G PPP
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 10/54 (18%)
Frame = +1
Query: 832 PPPGGXKXXXFXPPFXXGGAPXFSPXXXPPP----------PPXXKPPPXAPPP 963
PPP + PP G + P PPP PP + P PPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 832 PPPGGXKXXXFXPPFXXGGAPXFSPXXXPPPPPXXKPPPXAPP 960
P P PP AP P P PP P APP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/50 (32%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Frame = +1
Query: 823 PXXPPPG-GXKXXXFXPPFXXGGAPXFSPXXXPPPPPXXKP---PPXAPP 960
P PPP + PP P PP P P PP APP
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = +1
Query: 868 PPFXXG--GAPXFSPXXXPPPPPXXKPPPXAP 957
PP G AP P P PPP P P AP
Sbjct: 457 PPLPAGMPAAPPLPPAA-PAPPPAPAPAPAAP 487
Score = 25.0 bits (52), Expect(2) = 1.5
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = +1
Query: 88 PPPPXXXXXGPPXXXXGXXXGGXPPPPPPXXXXGXPPP 201
P PP PP PP PPP PP
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268
Score = 21.8 bits (44), Expect(2) = 1.5
Identities = 9/25 (36%), Positives = 10/25 (40%)
Frame = +1
Query: 193 PPPXXXXXXXXGGXXKKKXXPXPPP 267
PPP KK+ P PPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPP 317
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.027
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Frame = +1
Query: 88 PPPPXXXXXGP-----PXXXXGXXXGGXPPPPPPXXXXGXPPP 201
PPPP P P GG PPPPPP G PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 33.5 bits (73), Expect = 0.048
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 88 PPPPXXXXXGPPXXXXGXXXGGXPPPPPP 174
PP P PP G G PPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 32.3 bits (70), Expect = 0.11
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +1
Query: 868 PPFXXGGAPXFSPXXXPPPPPX-XKPPPXAPPPG 966
PP P +P PPP P PPP PPPG
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 31.9 bits (69), Expect = 0.15
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = +1
Query: 91 PPPXXXXXGPPXXXXGXXXGGXPPPPPPXXXXGXPPPXXXXXXXXGGXXKKKXXPXP 261
P P PP G G PPPPPP PPP + P P
Sbjct: 744 PAPAPIPVPPPAPIMG---GPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 31.5 bits (68), Expect = 0.19
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +3
Query: 90 PPPXXXXXGXPPXXXXXXXXGGXPPPPPXXXXGXPPP 200
PPP G PP G PPPPP PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP-----PPPP 783
Score = 29.9 bits (64), Expect = 0.59
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Frame = +1
Query: 823 PXXPPPGGXKXXXFXPPFXXGG-APXFSPXXXPPPPPXXKP--PPXAPPPGXXFXGGG 987
P PPP P AP PPPPP PP PPP GG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 29.5 bits (63), Expect = 0.78
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +1
Query: 157 PPPPPPXXXXGXPPPXXXXXXXXGGXXKKKXXPXPPPPXXXXXPP 291
PPPPPP P P P PPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/52 (26%), Positives = 14/52 (26%)
Frame = +3
Query: 162 PPPPXXXXGXPPPXXXXXXXXXGXXXKKXXXXPPPPXXXXXPPPXXPXXXPP 317
PPPP P P PPPP P P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.25
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 889 APXFSPXXXPPPPPXXKPPPXAPPP 963
AP PPPPP PPP + PP
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPP 1722
Score = 30.3 bits (65), Expect = 0.44
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Frame = +1
Query: 868 PPFXXGGAPXFSPXXXPPPP---PXXKPPPXAPPP 963
PP P P PPPP P PP APPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +1
Query: 832 PPPGGXKXXXFXPPFXXGGAPXFSPXXXPPPPPXXKPPPXAPPPG 966
PPP PP G P PPPP P P PG
Sbjct: 1709 PPPMSVPPPPSAPPMPAG------PPSAPPPPLPASSAPSVPNPG 1747
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.34
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 916 PPPPPXXKPPPXAPPP 963
PPPPP +PP PPP
Sbjct: 12 PPPPPGFEPPSQPPPP 27
Score = 29.9 bits (64), Expect = 0.59
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = +1
Query: 892 PXFSPXXXPPPPPXXKP--PPXAPPPG 966
P +P PPPP P PP PPPG
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +1
Query: 151 GXPPPPPPXXXXGXPPPXXXXXXXXGGXXKKKXXPXP 261
G PPPPPP G PP G KK+ P
Sbjct: 7 GNPPPPPP--PPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +1
Query: 868 PPFXXGGAPXFSPXXXPPPPPXXKPPPXAPPPG 966
P F +P FS PPPPP P P P G
Sbjct: 224 PEFQQTTSPIFSSSSTPPPPP---PRPSQPTSG 253
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +1
Query: 832 PPPGGXKXXXFXPPFXXGGAPXFSPXXXPPPPPXXKPPPXAPPP 963
PPP PP AP P PP PP PPP + P
Sbjct: 172 PPPAQPAAPVKSPP----SAPSL-PSAVPPMPPKVPPPPLSQAP 210
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Frame = +1
Query: 796 PI*KXXNXGPXXPPPGGXKXXXFXP-PFXXGGAPXFSPXXXPPPPPXXKPPPXAPPP 963
P+ K + P PPP P G P +P PP P P P P
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/56 (28%), Positives = 18/56 (32%)
Frame = +1
Query: 796 PI*KXXNXGPXXPPPGGXKXXXFXPPFXXGGAPXFSPXXXPPPPPXXKPPPXAPPP 963
P+ K + P P P P P P PP P P APPP
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPI---PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 22.2 bits (45), Expect(2) = 6.2
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 883 GGAPXFSPXXXPPPP 927
G P F P PPPP
Sbjct: 939 GVMPAFPPPPPPPPP 953
Score = 22.2 bits (45), Expect(2) = 6.2
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1
Query: 940 PPPXAPPPGXXFXGGG 987
PPP PPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = -1
Query: 998 PPPXPPPXKXXPGGGAXGGGXXXGGGGGXNXGEXXGAPPXKNGG 867
PPP P G G G GG G G G P GG
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 9.5
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +1
Query: 832 PPPGGXKXXXFXPPFXXGGAPXFSPXXXPPPPPXXKPPPXAPPP 963
PPP K PP P PPPP +P PPP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPG---EHMPPPPMHHEPGEHMPPP 249
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 9.5
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 862 FXPPFXXGGAPXFSPXXXPPPPPXXKPPPXA 954
F PP A PPPPP PPP A
Sbjct: 171 FQPPSAAAPATSLPSDYNPPPPP---PPPPA 198
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -1
Query: 956 GAXGGGXXXGGGGGXNXGEXXGAPPXKNGG 867
G GGG G GGG G G GG
Sbjct: 160 GGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,265
Number of Sequences: 5004
Number of extensions: 52703
Number of successful extensions: 368
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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