Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_H13
         (998 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.81 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   10.0 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.81
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 901 SPXXXPPPPPXXKPPPXAPP 960
           +P    PP P   PPP  PP
Sbjct: 33  APQRGSPPNPSQGPPPGGPP 52



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +2

Query: 95  PXXXXXGXPPXXXXGXXXGGXPPPPP 172
           P     G PP    G   GG P  PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 264 PPXXXXXPPPXXPXXXPP 317
           PP     PPP  P   PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 157  PPPPPPXXXXG 189
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,482
Number of Sequences: 438
Number of extensions: 11944
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33137286
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)