Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_H11
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch...    83   5e-17
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    28   2.1  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   4.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   8.4  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.4  

>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
 Frame = +2

Query: 443 SQRQAITELAPTQPA-VDEEEETPEIDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRE 619
           +  +A  E A +  A V + E    I   + N+V + ++ C L+L+ IAL+  N E+  +
Sbjct: 29  ANNEATNETADSGDAEVSKNEGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPK 88

Query: 620 N-GMVTMKLRRPYTTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGFEVRFRNF 790
               V M++R P +TA I++SG++   G  SED +K+A+R+YAR +QKLGF  +F +F
Sbjct: 89  RFAAVIMRIREPKSTALIFASGKMVVLGGKSEDDSKLASRKYARIIQKLGFNAKFTDF 146


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +2

Query: 335 SKGTHGVVANHGISTHSVPTHMVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETP 511
           SK T  ++ +H     +  T    + ++      TP QR+A T   P   A  ++ E P
Sbjct: 292 SKSTDNIIRSHSPVLLTPQTLSTSETKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAP 350


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +2

Query: 344 THGVVANHGISTHSVPTHMVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETPEIDI 523
           T  + AN  ++ HS P  +    E  +TT+    +   +T L+P +P+    EE     I
Sbjct: 395 TRPINANPHLTNHS-PNDLTNGEEEMDTTSAFNIENSHLTLLSPIRPSSRSMEE----QI 449

Query: 524 M-INNVVCSFSVKCHLN 571
           M +   + S +   HLN
Sbjct: 450 MDLTQPISSTNAPTHLN 466


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 329 ELSKGTHGVVANHGISTHSVPTHMVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEET 508
           E++KG  G+ +       S  TH  P+      T  TP  +  I   AP++PA     + 
Sbjct: 340 EINKG-EGITSGLRKVDKSEMTHKNPN---LRKTGPTPGPKPKIKSSAPSKPAETAPVKP 395

Query: 509 PEIDI 523
           P I++
Sbjct: 396 PRIEL 400


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +2

Query: 374 STHSVPTHMVPDHEYCETTAQTPSQRQ--AI-TELAPTQPAVDEEEETPEIDIMIN 532
           ST    T   P  E  ET  + P  +   A+ TE + T+P+   EE TP   +  N
Sbjct: 422 STPKEETEESPSTELPETGKEQPPNKAEPAVPTEASSTKPSEAAEESTPRFSVRPN 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,475,789
Number of Sequences: 5004
Number of extensions: 68304
Number of successful extensions: 241
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)