Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_H11
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0114 - 14911119-14911301,14911458-14911550,14911634-149116... 92 5e-19
12_02_0891 + 24065001-24065101,24065260-24065345,24065902-240659... 90 3e-18
03_05_0548 + 25439649-25439734,25440712-25440799,25441160-254412... 80 2e-15
04_04_0328 + 24441747-24442073,24442205-24442327,24442947-244430... 31 0.94
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 31 1.6
02_01_0097 + 712586-713035,714120-715080,715577-715746 30 2.2
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 29 5.0
11_06_0259 - 21757190-21758467 28 8.8
>10_08_0114 -
14911119-14911301,14911458-14911550,14911634-14911678,
14911831-14911953,14912090-14912177,14912976-14913118
Length = 224
Score = 92.3 bits (219), Expect = 5e-19
Identities = 45/102 (44%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Frame = +2
Query: 488 VDEEEETPEIDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTA 664
VD E I + N+V + ++ C L+L++IAL N E+ + V M++R P TTA
Sbjct: 34 VDLVEHPSGIVPTLQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTA 93
Query: 665 SIWSSGRVTCTGATSEDQAKIAARRYARALQKLGFEVRFRNF 790
I++SG++ CTGA SED +K+AAR+YAR +QKLGF +F++F
Sbjct: 94 LIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDF 135
>12_02_0891 +
24065001-24065101,24065260-24065345,24065902-24065965,
24066137-24066224,24066810-24066881,24067821-24067871,
24067940-24067984,24068086-24068178,24068265-24068366,
24068442-24068515,24068540-24068579
Length = 271
Score = 89.8 bits (213), Expect = 3e-18
Identities = 41/87 (47%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Frame = +2
Query: 533 NVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGATS 709
N+V + ++ C L+L+ IAL N E+ + V M++R P TTA I++SG++ CTGA S
Sbjct: 85 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 144
Query: 710 EDQAKIAARRYARALQKLGFEVRFRNF 790
E Q+K+AAR+YAR +QKLGF +F++F
Sbjct: 145 EQQSKLAARKYARIIQKLGFAAKFKDF 171
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 518 DIMINNVVCSFSVKCHLNLRQIALN-GVNVEFRRE--NGMVTMKLRRPYTTASIWSSGRV 688
D I N+V S VK + L +A + G + E G++ ++++P I+ SG++
Sbjct: 170 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLI-YRMKQPKIVLLIFVSGKI 228
Query: 689 TCTGATSEDQAKIA 730
TGA D+ A
Sbjct: 229 VLTGAKVRDETYTA 242
>03_05_0548 +
25439649-25439734,25440712-25440799,25441160-25441204,
25441407-25441478,25442402-25442452,25442527-25442571,
25442670-25442762,25442848-25442949,25443024-25443097,
25443130-25443160
Length = 228
Score = 80.2 bits (189), Expect = 2e-15
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Frame = +2
Query: 452 QAITELAPTQPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRREN--- 622
+A L ++P VD + I + N+V + ++ C L+L+ IAL N E+ +
Sbjct: 4 EAAAALEGSEP-VDLAKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKTQHE 62
Query: 623 -------------GMVTMKLRRPYTTASIWSSGRVTCTGATSEDQAKIAARRYARALQKL 763
V M++R P TTA I++SG++ CTGA SE Q+K+AAR+YAR +QKL
Sbjct: 63 VLGDFVTICNIRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKL 122
Query: 764 GFEVRFRNF 790
GF +F++F
Sbjct: 123 GFPAKFKDF 131
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 518 DIMINNVVCSFSVKCHLNLRQIALN-GVNVEFRRE--NGMVTMKLRRPYTTASIWSSGRV 688
D I N+V S VK + L +A + G + E G++ ++++P I+ SG++
Sbjct: 130 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLI-YRMKQPKIVLLIFVSGKI 188
Query: 689 TCTGATSEDQAKIA 730
TGA D+ A
Sbjct: 189 VLTGAKVRDETYTA 202
>04_04_0328 +
24441747-24442073,24442205-24442327,24442947-24443012,
24443155-24443223,24443263-24443307
Length = 209
Score = 31.5 bits (68), Expect = 0.94
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 308 IQENGIKELSKGTHGVVANHGISTHSVPTH 397
I E+GI +L+ HG +HG S +V TH
Sbjct: 30 ISEDGIPDLTDSIHGAAHHHGRSEENVSTH 59
>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 749 RVHNVEQQSWLDLHWWRPCTSRVLTTKSKPSCTA 648
R+ ++QQ+ +LH+ +V TKSKP+C A
Sbjct: 1457 RLCKLDQQTLYELHYQMITFGKVFCTKSKPNCNA 1490
>02_01_0097 + 712586-713035,714120-715080,715577-715746
Length = 526
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 268 QFISALRGGHGDAHPREWY*RAEQGHPRGSGKPWHIHTQCPNTYG 402
+FI +GG GD + W R G P G+ H P G
Sbjct: 464 KFIPGPKGGGGDGRGKGWRKRRTGGRPAAGGRGCGAHAAAPRVGG 508
>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 749 RVHNVEQQSWLDLHWWRPCTSRVLTTKSKPSCTA 648
R+ ++Q++ +LH+ +V TKSKP+C A
Sbjct: 1558 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNA 1591
>11_06_0259 - 21757190-21758467
Length = 425
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 144 NIKETSYLQLFTEKNQKLFHILSSTAMXPEQNQNLKEFPI 25
N+ ET Y F KN +LF++L+ N N P+
Sbjct: 220 NLPETGYRYAFYNKNDRLFYLLNCLGSIHTLNLNGPSSPV 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,602,907
Number of Sequences: 37544
Number of extensions: 452468
Number of successful extensions: 1343
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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