Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_H11
(900 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-8|AAA19055.1| 340|Caenorhabditis elegans Tata-binding pr... 90 2e-18
L07754-1|AAA03582.1| 340|Caenorhabditis elegans TATA-box bindin... 90 2e-18
AF303249-1|AAG50207.1| 340|Caenorhabditis elegans transcription... 90 2e-18
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 75 5e-14
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 75 5e-14
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 75 5e-14
AF068709-9|AAC19248.1| 349|Caenorhabditis elegans Seven tm rece... 28 7.9
>U10401-8|AAA19055.1| 340|Caenorhabditis elegans Tata-binding
protein protein 1 protein.
Length = 340
Score = 89.8 bits (213), Expect = 2e-18
Identities = 48/123 (39%), Positives = 76/123 (61%), Gaps = 1/123 (0%)
Frame = +2
Query: 428 TAQTPSQRQAITELAPTQPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIALNGVNVE 607
T Q P+ A T + P PA + P + N+V + ++ L+L++IAL+ N E
Sbjct: 140 THQAPASNIAAT-MVPATPASQLDIPMPALQ----NIVSTVNLGVQLDLKKIALHARNAE 194
Query: 608 FRREN-GMVTMKLRRPYTTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGFEVRFR 784
+ + V M++R P TTA I+SSG++ CTGA SE+ +++AAR+YAR +QKLGF+ +F
Sbjct: 195 YNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQAKFT 254
Query: 785 NFV 793
F+
Sbjct: 255 EFM 257
>L07754-1|AAA03582.1| 340|Caenorhabditis elegans TATA-box binding
protein protein.
Length = 340
Score = 89.8 bits (213), Expect = 2e-18
Identities = 48/123 (39%), Positives = 76/123 (61%), Gaps = 1/123 (0%)
Frame = +2
Query: 428 TAQTPSQRQAITELAPTQPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIALNGVNVE 607
T Q P+ A T + P PA + P + N+V + ++ L+L++IAL+ N E
Sbjct: 140 THQAPASNIAAT-MVPATPASQLDIPMPALQ----NIVSTVNLGVQLDLKKIALHARNAE 194
Query: 608 FRREN-GMVTMKLRRPYTTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGFEVRFR 784
+ + V M++R P TTA I+SSG++ CTGA SE+ +++AAR+YAR +QKLGF+ +F
Sbjct: 195 YNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQAKFT 254
Query: 785 NFV 793
F+
Sbjct: 255 EFM 257
>AF303249-1|AAG50207.1| 340|Caenorhabditis elegans transcription
factor TFIID protein.
Length = 340
Score = 89.8 bits (213), Expect = 2e-18
Identities = 48/123 (39%), Positives = 76/123 (61%), Gaps = 1/123 (0%)
Frame = +2
Query: 428 TAQTPSQRQAITELAPTQPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIALNGVNVE 607
T Q P+ A T + P PA + P + N+V + ++ L+L++IAL+ N E
Sbjct: 140 THQAPASNIAAT-MVPATPASQLDIPMPALQ----NIVSTVNLGVQLDLKKIALHARNAE 194
Query: 608 FRREN-GMVTMKLRRPYTTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGFEVRFR 784
+ + V M++R P TTA I+SSG++ CTGA SE+ +++AAR+YAR +QKLGF+ +F
Sbjct: 195 YNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQAKFT 254
Query: 785 NFV 793
F+
Sbjct: 255 EFM 257
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 75.4 bits (177), Expect = 5e-14
Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Frame = +2
Query: 458 ITELAPTQPAVDEEEETPE---IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGM 628
+ ++ P + EE P+ IDI I NVVC++++ H++LR++A+N NV + RE G+
Sbjct: 241 VPDVPPEGTSAANEEPMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGV 300
Query: 629 VTMKLRRPYTTASIWSSGRVTCTGATSEDQAKIAARRYARALQKL 763
+ + R P ++SSG+V G SE K AAR AR +Q++
Sbjct: 301 MMKQKRSPGCYIKVYSSGKVYIVGCRSEADCKRAARSIARHVQRV 345
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 75.4 bits (177), Expect = 5e-14
Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Frame = +2
Query: 458 ITELAPTQPAVDEEEETPE---IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGM 628
+ ++ P + EE P+ IDI I NVVC++++ H++LR++A+N NV + RE G+
Sbjct: 241 VPDVPPEGTSAANEEPMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGV 300
Query: 629 VTMKLRRPYTTASIWSSGRVTCTGATSEDQAKIAARRYARALQKL 763
+ + R P ++SSG+V G SE K AAR AR +Q++
Sbjct: 301 MMKQKRSPGCYIKVYSSGKVYIVGCRSEADCKRAARSIARHVQRV 345
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 75.4 bits (177), Expect = 5e-14
Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Frame = +2
Query: 458 ITELAPTQPAVDEEEETPE---IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGM 628
+ ++ P + EE P+ IDI I NVVC++++ H++LR++A+N NV + RE G+
Sbjct: 241 VPDVPPEGTSAANEEPMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGV 300
Query: 629 VTMKLRRPYTTASIWSSGRVTCTGATSEDQAKIAARRYARALQKL 763
+ + R P ++SSG+V G SE K AAR AR +Q++
Sbjct: 301 MMKQKRSPGCYIKVYSSGKVYIVGCRSEADCKRAARSIARHVQRV 345
>AF068709-9|AAC19248.1| 349|Caenorhabditis elegans Seven tm
receptor protein 13 protein.
Length = 349
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 817 YMFPIH*LHEVAEAHFKAEFL*GACITSSSNLG 719
Y+F IH H + + F A F+ G C+ S + LG
Sbjct: 5 YLFWIHVTHFIPKLGFVATFMFGMCLLSLNYLG 37
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,637,584
Number of Sequences: 27780
Number of extensions: 401321
Number of successful extensions: 1225
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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