Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_H10
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    80   4e-16
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    53   5e-08
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    30   0.52 
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    29   1.2  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    28   2.1  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   6.5  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    26   8.5  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   8.5  

>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 80.2 bits (189), Expect = 4e-16
 Identities = 43/112 (38%), Positives = 60/112 (53%)
 Frame = +1

Query: 49  EAQKSGIAKSGTRFIEPTSGNTGIGVALATAVCGFGCTIVTPDKNSDEKMSTISLLGAEV 228
           +A+K G    G   +E T+GNTGIG+A      G+ C I  P+  S  K+ T+  LGAEV
Sbjct: 64  DAEKKGKLSRGGTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEV 123

Query: 229 VQTPAMAPWESSEHFLSVAKRRLLEDPNAISCDQYKNDVNPRTHYEYTAEEI 384
              P +AP+ +  ++   A+R     PNA   DQ+ N  N  +HYE T  EI
Sbjct: 124 HPVP-VAPFSNPLNYNHQARRHAESTPNASWTDQFDNVANLLSHYETTGPEI 174



 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
 Frame = +2

Query: 551 FVEGIG-GDFVPDVLDK-SVIDKVEKPNDYDAFNMSREIIKKEGLLCGGSSGAAMISAIR 724
           F EGIG G    +V     +ID   K  D  + NM   ++ +EGL  GGSS   +++A+ 
Sbjct: 240 FTEGIGQGRITGNVQPVYDLIDDAMKIPDEKSINMFFRLLDQEGLFLGGSSCLNVVAAVE 299

Query: 725 AAKKLNFGAGKRVVVILPDGIRNYMTKFVCXQWMEA-HLFK--EPPXREFL 868
            AK L  G GK VV IL D    Y T+     ++E+  LF   EP  ++++
Sbjct: 300 MAKIL--GPGKTVVTILCDSGHKYATRLFSRSFLESKKLFDVIEPQYKKYI 348


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 53.2 bits (122), Expect = 5e-08
 Identities = 39/148 (26%), Positives = 58/148 (39%), Gaps = 8/148 (5%)
 Frame = +1

Query: 94  EPTSGNTGIGVALATAVCGFGCTIVTPDKNSDEKMSTISLLGAEVVQTPAMAPWESSEHF 273
           E T+G+TGI +A+     G+   I  P   S EK   + LLGA  VQ    AP     HF
Sbjct: 110 EGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAH-VQRVTPAPIVDPNHF 168

Query: 274 LSVAKRRLLEDP-------NAISCDQYKNDVNPRTHYEYTAEEI-LALVPDVDMIXXXXX 429
           ++ A+R                  +Q++N  N + H+  T  EI       +D       
Sbjct: 169 VNTARRNAANHTVDESIPGKGYFANQFENPANWQAHFNSTGPEIWRQCAGKLDAFIAGSG 228

Query: 430 XXXXXXXXAQKVKEKCPKCIIVTVDPQG 513
                   ++ +K K P   +   DP G
Sbjct: 229 TGGTIAGISRYLKSKDPSITVCLADPPG 256



 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
 Frame = +2

Query: 554 VEGIGGDFVPD--VLDKSVIDKVEKPNDYDAFNMSREIIKKEGLLCGGSSGAAMISAIRA 727
           VEG+G + +     + + +ID   +  D  A  MSR ++  +GL  G SS    ++A+R 
Sbjct: 287 VEGVGINRMTRNFSIAEPLIDMAYRVTDEQAVAMSRYLVTHDGLFVGSSSAVNCVAAVRL 346

Query: 728 AKKLNFGAGKRVVVILPD-GIRNY 796
           AKKL  G G R+V +L D G R++
Sbjct: 347 AKKL--GPGHRIVTLLCDPGSRHF 368


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 100 TSGNTGIGVALATAVCGFGCTIVTPDKNSDEKMSTISLLGAEVV 231
           ++GN   GVA +    G   TIV P    + K   +  LGA V+
Sbjct: 168 SAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNVKRLGANVL 211


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 185 EFLSGVTMVHPNPQTAVAKATPIPVFPDVGSMNLVPDFAI 66
           E +SG   +H +P+  V +   + V PDVG    +  FAI
Sbjct: 502 EIMSGAQRIH-DPELLVERMKALGVSPDVGLQQYIDAFAI 540


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 571 SSDSFNEVEIGRPFTKYERAPEDQPSQ 491
           S++   + E+G     Y++ PED+PSQ
Sbjct: 3   SANFIRQFELGNDSFSYQKRPEDEPSQ 29



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 790 PNTVRQNDNNTFPSSKVEFFCSPYSRNHGR 701
           P TV +N+N     ++++F  + Y RN  R
Sbjct: 667 PFTVNENNNKNLSIAELKFQVAAYERNEAR 696


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 140 AVAKATPIPVFPDVGSMNLVPDFAIPDFCASKNLKEFP 27
           A     P+P  P VG+   VP  +IP+       + FP
Sbjct: 232 AATSIPPVPNVPLVGATTAVPPLSIPNVLPFTAAQHFP 269


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 631 IIWFFNFIDHAFIQHIW-NEISSDSFNEVEI 542
           + WFF  I H F    W  +++S  F  +E+
Sbjct: 96  VSWFFGIIGHYFFNPEWFADVTSRGFESLEL 126


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = -3

Query: 619 FNFIDHAFIQHIWNEISSDSFNEVEIGRPFTKYERAPEDQPSQLCILGISLSLFVRHLSP 440
           F F+D+ F    W +    S   ++I   F    R P  + +   I+   L + ++HL  
Sbjct: 8   FFFVDNYFF--FWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILIMIIQHLKE 65

Query: 439 FHRSLNPS 416
            H  ++ S
Sbjct: 66  IHYLISAS 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,686,183
Number of Sequences: 5004
Number of extensions: 79337
Number of successful extensions: 241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)