Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_H10
         (912 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...   134   8e-34
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   8.9  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score =  134 bits (325), Expect = 8e-34
 Identities = 69/156 (44%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
 Frame = +1

Query: 49  EAQKSGIAKSGTRFIEPTSGNTGIGVALATAVCGFGCTIVTPDKNSDEKMSTISLLGAEV 228
           +A+  G+ K G   IEPTSGNTGIG+A+A AV G+ C IV P+K SDEK+ST+  LGA++
Sbjct: 88  DAEDKGLLKPGCTIIEPTSGNTGIGLAMAAAVRGYKCIIVMPEKMSDEKISTLYALGAKI 147

Query: 229 VQTPAMAPWESSEHFLSVAKRRLLEDPNAISCDQYKNDVNPRTHYEYTAEEILALVP-DV 405
           ++TP  A W S E  +SVA++   E PN+I  DQY N  NP  HY+ TA EI       +
Sbjct: 148 IRTPTEASWHSPEAHISVAQKLQKEIPNSIILDQYTNPGNPLAHYDQTAIEIWKQCEGKI 207

Query: 406 DMIXXXXXXXXXXXXXAQKVKEKCPKCIIVTVDPQG 513
           D +              +K+KE  P   I+ VDP+G
Sbjct: 208 DYLVAGAGTGGTISGIGRKLKELSPNIKIIAVDPKG 243



 Score =  124 bits (300), Expect = 9e-31
 Identities = 61/113 (53%), Positives = 81/113 (71%), Gaps = 3/113 (2%)
 Frame = +2

Query: 548 YFVEGIGGDFVPDVLDKSVIDKVEKPNDYDAFNMSREIIKKEGLLCGGSSGAAMISAIRA 727
           Y VEGIG DF+P VLD++VIDK  K  D ++ N +R +I++EGLLCGGSSGAA+I+A++ 
Sbjct: 259 YEVEGIGYDFIPTVLDRNVIDKWIKTEDNESLNAARMLIRQEGLLCGGSSGAALIAALKI 318

Query: 728 AKKLNFGAGKRVVVILPDGIRNYMTKFVCXQWMEAHLFKEPPXREFL---WWN 877
           AK  +    KR+V+ILPDGIRNY+TKFV   WME   F +P  +  +   WWN
Sbjct: 319 AK--DIPEEKRMVIILPDGIRNYLTKFVSEYWMETRGFLQPVCQNEMNKWWWN 369


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 417 DGFRDRWNGDRCRTKSEREMPKMHN 491
           DGF   W G R RT     MP++ N
Sbjct: 627 DGFN--WEGLRARTLEPPIMPRVQN 649


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 912 GTVXLRSS**XXFHHKNSRXGGSLKRCASIHXWHTNLVI*FRIPSG 775
           G + LR       H ++S    S +R  S+H  H +     RIP G
Sbjct: 65  GALKLRIRCSDVHHFESSFNAQSWQRLTSLHELHVHGCKVLRIPEG 110


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 292 RLLEDPNAISCDQYKNDVNPRTHYEYTAEE 381
           RLL++P+A   D  K+D     H  YT ++
Sbjct: 233 RLLDEPSANRTDLSKDDYESLVHL-YTRDQ 261


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 506 GSTVTIMHFGHFSF 465
           GS VT++ +GH SF
Sbjct: 289 GSDVTVLGWGHTSF 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,803
Number of Sequences: 438
Number of extensions: 5996
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)