Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_H09
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 33 0.24
07_03_1136 + 24218601-24218734,24218769-24219906 31 0.95
09_04_0368 + 17005231-17005437,17005707-17005963,17006061-170061... 31 1.7
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 2.9
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 29 3.8
02_05_0686 - 30900748-30902167,30903442-30904742 29 6.7
02_04_0400 - 22608519-22608844,22609044-22609122 29 6.7
01_03_0005 + 11568545-11569119,11569179-11569191 29 6.7
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.9
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 28 8.9
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 33.5 bits (73), Expect = 0.24
Identities = 26/98 (26%), Positives = 28/98 (28%)
Frame = +1
Query: 436 PPPXGXGXFFLXPXPXPPXKXPGPRVXXXXXXFSPPQXGXXGFPQXXGXPXKKPFXQXXP 615
PPP G FL P P PP P P PPQ Q P + + Q P
Sbjct: 42 PPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQ-------QQQPPPPPQMYYQPPP 94
Query: 616 KXXXXXXXXXXXXXSXRXPPPKXXXKXXPPKXRGGQPP 729
PP PP QPP
Sbjct: 95 PPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPP 132
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 31.5 bits (68), Expect = 0.95
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = -3
Query: 897 PPRGNPXXGGXGXRXPPXPXGGKXGXGXFFXXRGGERGG 781
PP P GG G PP P GG G GG GG
Sbjct: 117 PPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGG 155
>09_04_0368 +
17005231-17005437,17005707-17005963,17006061-17006115,
17006196-17006276,17006357-17006453,17006560-17006627,
17006788-17006886,17007008-17007049,17007124-17007263,
17007882-17008018,17008275-17008444
Length = 450
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +2
Query: 437 PPXGXXGXFFWXPXPXPPXXXXGPGXGGGGXG 532
PP F W P P PP G G GGGG G
Sbjct: 6 PPWLLLPSFPWPPPP-PPGSSSGRGGGGGGGG 36
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +2
Query: 434 PPPXGXXGXFFWXPXPXPPXXXXGPGXGGGGXGFXPPXGGXRXSPKXXGXP 586
PPP P P PP G GGGG PP P+ G P
Sbjct: 353 PPPAAPAAPRPPGPGPGPPPPPGAAGRGGGG----PPPPALPGGPRARGPP 399
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +2
Query: 437 PPXGXXGXFFWXPXPXPPXXXXGPGXGGGGXGFXPP 544
PP F P P PP P GGGG GF P
Sbjct: 67 PPPPPAAFFAAVPPPPPPPFEYYPAVGGGG-GFGAP 101
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = +2
Query: 434 PPPXGXXGXFFWXPXPXPPXXXXGPGXGGGGXGFXPPXGGXRXSPKXXGXP 586
PPP G P P PP PG GG PP GG P G P
Sbjct: 354 PPPPPPKGP---SPPPPPP-----PGGKKGGPPPPPPKGGASRPPAAPGVP 396
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 503 GPGXGGGGXGFXPPXGGXRXSP 568
G G GGGG G+ PP G P
Sbjct: 83 GGGGGGGGGGYYPPWNGGYYPP 104
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +2
Query: 446 GXXGXFFWXPXPXPPXXXXGPGX--GGGGXGFXPPXGG 553
G G P PP G G GGGG + PP GG
Sbjct: 82 GGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGG 119
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 420 PXKKXPPPXGXGXFFFGPXPXXPPXXPXAP 509
P PPP G F P P PP P P
Sbjct: 547 PPPPPPPPSGNKPAFSPPPPPPPPPPPPLP 576
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/39 (30%), Positives = 15/39 (38%)
Frame = +3
Query: 783 PPFPXPXXXRXTLXPXFPLXGXGGPFXXNPPXXGFPGXG 899
PP+P P R + + G PF P G P G
Sbjct: 531 PPYPLPMQMRPPMATPAQMRGPPSPFPQTGPTPGMPPAG 569
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.151 0.541
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,117,144
Number of Sequences: 37544
Number of extensions: 364610
Number of successful extensions: 1082
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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