Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_H08
         (944 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    33   0.30 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    33   0.39 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    33   0.39 
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    31   1.6  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    31   1.6  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    28   8.5  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = +2

Query: 581 GGGXXPPPPXKKKXXXXGGGXXXXXXXXGGGXGXXXXFGG 700
           GGG  PPPP        GGG        GGG G     GG
Sbjct: 106 GGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGG 145



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = +2

Query: 581 GGGXXPPPPXKKKXXXXGGGXXXXXXXXGGGXGXXXXFGG 700
           GGG  PPPP        GGG        GGG G     GG
Sbjct: 49  GGGCAPPPPPPACGGGCGGG-GGGCGGGGGGCGGGGGCGG 87



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +2

Query: 581 GGGXXPPPPXKKKXXXXGGGXXXXXXXXGGGXGXXXXFGG 700
           GG   PPPP        GGG        GGG G     GG
Sbjct: 107 GGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGG 146


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = -1

Query: 707 FXXPQKXXXXPXPPPGXXXXXXXPPPXXXFFFXXGGGXXPPP 582
           F  P      P PPPG       PPP    +   G G  PPP
Sbjct: 325 FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 366


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = -1

Query: 707 FXXPQKXXXXPXPPPGXXXXXXXPPPXXXFFFXXGGGXXPPP 582
           F  P      P PPPG       PPP    +   G G  PPP
Sbjct: 335 FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 376


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
 Frame = -3

Query: 714 FFFFXPPKXXXXPXPPPXXXXXXXXPP--PXXXFFFXXGGGGXXPPP 580
           F FF PP     P PPP        PP  P    F      G  PPP
Sbjct: 293 FGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPP 339


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
 Frame = -3

Query: 714 FFFFXPPKXXXXPXPPPXXXXXXXXPP--PXXXFFFXXGGGGXXPPP 580
           F FF PP     P PPP        PP  P    F      G  PPP
Sbjct: 293 FGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPP 339


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +2

Query: 581 GGGXXPPP-PXKKKXXXXGGGXXXXXXXXGGGXGXXXXFGG 700
           GGG  PPP P        GGG        GGG G     GG
Sbjct: 69  GGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGG 109


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +2

Query: 581 GGGXXPPP-PXKKKXXXXGGGXXXXXXXXGGGXGXXXXFGG 700
           GGG  PPP P        GGG        GGG G     GG
Sbjct: 69  GGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGG 109


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = -1

Query: 671 PPPGXXXXXXXPPPXXXFFFXXGGGXXPPPXFXKKXXG 558
           PPP        PPP        G G  PPP F ++  G
Sbjct: 771 PPPPRGGMHHMPPPPSFRGGRGGHGGPPPPHFDRRGGG 808


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,648,368
Number of Sequences: 27780
Number of extensions: 268720
Number of successful extensions: 501
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)