Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_H07
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 30 0.39
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 27 3.6
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 27 4.8
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 27 4.8
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 27 4.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 6.3
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 26 6.3
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 8.3
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 26 8.3
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 26 8.3
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 30.3 bits (65), Expect = 0.39
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 297 APYEVPQFPIEQIEKKLLIQRQLNVKAAECAQSV 398
AP++VP F +E ++ + QL + A+CA ++
Sbjct: 41 APFDVPPFKVESLDVLISQSEQLTKQDAQCASAI 74
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = -3
Query: 652 KRAVMGEKLCWDISM*RLRISRACTRYEDAC*RSSSGTPEVSSPLIATRW 503
K V G +L W I+ L I R TRY + C S SG +V I RW
Sbjct: 293 KLIVPGLRLGW-ITGNSLFIDRI-TRYAEVCTESPSGVSQVVLYAILNRW 340
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 376 RRNAPSRCVHSRAAKQARQPCLKRRLGSGSPMMTMTRSYCRTSSVSLSA 522
R A +R ++S A A P +R++ SGS +MT+S ++VS +A
Sbjct: 120 RGPANTRVMNSSAG--ATGPSRRRQVSSGSSTPSMTKSSANNNNVSSTA 166
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 576 LVQALEMRKRYMEMSQQSFSPITARFIRSMDADAVANHVPVKVPTN 713
L+ + R + + SF I I D D++ NHV + +PTN
Sbjct: 123 LIVVTDPRADAQAIKEASFVNIPV--IALCDTDSILNHVDIAIPTN 166
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +3
Query: 126 AAGFVGSTKNFPFSFDVDVEDEEPGRTTPLLNKRVGSESPTSAVGAEAPREL----PNEL 293
++GF + + PFSF++ E +E T + G + ++ A+A PN
Sbjct: 655 SSGFGNTAGSSPFSFNLTKESKEVPPTNSFSFAKKGKDEANDSLSAKASTPFSFAKPNTE 714
Query: 294 SAPYEVPQF 320
+ PQF
Sbjct: 715 NVTTTAPQF 723
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 192 EPGRTTPLLNKRVGSESPTSAVGAEAPRELPNELSAPYEVPQFPIEQIEKKLLIQ 356
EP R T +NK SE PR P + P E + P+E+ + + +Q
Sbjct: 956 EPARVTESMNKMNISEEAKKPEAPSRPRTAP--IPEPEEQKKAPVEKKDAEKSVQ 1008
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 674 IRVHAPDEARRNGREALLGHLHVTLAHFQSLHQVRGRLLKI 552
+R+ +PDE N + L H + T+ L RGR+ ++
Sbjct: 450 LRIFSPDELESNKLDGALKHSYRTMQTDPELMAKRGRVTEV 490
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 8.3
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +2
Query: 485 DHIAALPACRYQRRGYFRGTTGRSSTSVLVPGAGSGNAQALHGDVPAELLAHYGALHQEH 664
DH++ +P Y GYF LV G ALH + + L H AL EH
Sbjct: 115 DHVSLIPPKSYYENGYF------PEKETLVEARNVGAVYALHRIMSHKSLQH--ALPPEH 166
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 512 RYQRRGYFRGTTGRSSTSVLVPGAGSGNAQALHGDVPAELLAH 640
RY R R + S + G+ G+ Q HG V ++LLA+
Sbjct: 650 RYHSRA-LRDVSYHPSLPLFCSGSDDGDVQVFHGRVYSDLLAN 691
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +3
Query: 498 HFQRVAISGEDTSGVPLEDLQQASSYLVQALEMRKRYMEMSQQSFSPI 641
+ + +++ G G +ED ++ SY++ L+ R+ +M SF+P+
Sbjct: 314 YIKYLSLIGYLFDGSEIED-EEVRSYILPPLKNTLRFSDMESSSFAPM 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,733
Number of Sequences: 5004
Number of extensions: 69310
Number of successful extensions: 215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -