Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_H07
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   1.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   5.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 658 GAWTRMP*PTTYPLKYQQTYCGPYSPPSIXRQGSVGMSYAGAQGLQ 795
           GA  ++P   T  ++ Q    G    PS+ RQG  G  Y GA G Q
Sbjct: 29  GAAVQVP-QQTQSVQQQSQQAGDPCDPSLLRQGVPGHHY-GAAGSQ 72


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 120 AMAAGFVGSTKNFPFSFD 173
           AM +G    TKN+PF  D
Sbjct: 57  AMQSGEYDHTKNYPFDVD 74


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 70  ALCLQITQNLKEFPI 26
           A+C  + +N+ EFP+
Sbjct: 191 AICAMLKENMPEFPL 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,993
Number of Sequences: 438
Number of extensions: 4739
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)