Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_H04
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    33   0.23 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    33   0.23 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    33   0.23 
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   8.5  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +2

Query: 620 PPXKXXPXXXXXGXPPXGXKXXXXXPPXXXXXPPPXXFFXXXPPXGG 760
           PP K  P     G PP         PP     PPP       PP GG
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 287


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +2

Query: 620 PPXKXXPXXXXXGXPPXGXKXXXXXPPXXXXXPPPXXFFXXXPPXGG 760
           PP K  P     G PP         PP     PPP       PP GG
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 308


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +2

Query: 620 PPXKXXPXXXXXGXPPXGXKXXXXXPPXXXXXPPPXXFFXXXPPXGG 760
           PP K  P     G PP         PP     PPP       PP GG
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 293


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = +3

Query: 621  PPXKXXXXXXXXXXPPGGXXXXXXXPPXXXXPPPXXXFXXXXPPXGGGG 767
            PP            PP G       PP    PPP        PP   GG
Sbjct: 1561 PPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGG 1609


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,020,993
Number of Sequences: 27780
Number of extensions: 322330
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)