Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_H03
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   320   2e-88
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   319   3e-88
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   6.7  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   6.7  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.9  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   8.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  320 bits (785), Expect = 2e-88
 Identities = 148/256 (57%), Positives = 188/256 (73%), Gaps = 1/256 (0%)
 Frame = +3

Query: 75  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 254
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 255 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 434
           DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 435 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 614
           NW+             + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178

Query: 615 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXXL 794
           MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID I            +RW T  L
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL 238

Query: 795 PVR-HTXVLRNCCIGA 839
           P + H  + +  CIGA
Sbjct: 239 PRKTHRGLRKVACIGA 254


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  319 bits (784), Expect = 3e-88
 Identities = 147/256 (57%), Positives = 188/256 (73%), Gaps = 1/256 (0%)
 Frame = +3

Query: 75  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 254
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 255 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 434
           DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 435 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 614
           NW+             + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178

Query: 615 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXXL 794
           MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID I            +RW T  L
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL 238

Query: 795 PVR-HTXVLRNCCIGA 839
           P + H  + +  CIGA
Sbjct: 239 PRKTHRGLRKVACIGA 254


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 543 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 653
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 349 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 501
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 191 FARVVFRERLDLTTMTTGPLFGIESHRPM-TGC*KFSVRHAGRQSQTKMQKNLKEFPIVN 15
           +    FR    + T+     F + S + + T   K  +   G+Q Q + QKN K+  +VN
Sbjct: 3   YEEAFFRWAFLIATVYVAYYFLVSSDKKLATKPQKSKLTKLGKQKQRQKQKNTKKDTLVN 62

Query: 14  R 12
           R
Sbjct: 63  R 63


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -1

Query: 251 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 87
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,671,138
Number of Sequences: 5004
Number of extensions: 75167
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)