Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_H01
         (982 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1022 - 21778315-21779007                                         31   1.4  
05_01_0142 - 940421-940701,941262-941574                               30   2.5  
06_03_0175 + 17553447-17553667,17555313-17555467,17555625-175557...    29   5.7  

>04_03_1022 - 21778315-21779007
          Length = 230

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 21/78 (26%), Positives = 25/78 (32%)
 Frame = +3

Query: 564 PXXXPPEXAXXPPRXXXGLXXAAPPPXXXSPPXXXXXXPXIKPGAGRXXXXRXXPPGGFP 743
           P   PP     PP     L    PPP    PP      P + P +         PP   P
Sbjct: 16  PPPPPPATRARPPCSSAHLLPPPPPP----PPPPPYVPPHLLPPSPAPQQWYDHPPNYHP 71

Query: 744 XHXPGXXFXAPXXFXPXY 797
            H P     AP  + P +
Sbjct: 72  PHTPAPA-PAPGPYIPPH 88


>05_01_0142 - 940421-940701,941262-941574
          Length = 197

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 18/58 (31%), Positives = 20/58 (34%)
 Frame = +3

Query: 576 PPEXAXXPPRXXXGLXXAAPPPXXXSPPXXXXXXPXIKPGAGRXXXXRXXPPGGFPXH 749
           PP+    PP        A PPP    PP      P      G        PPGG+P H
Sbjct: 36  PPQGYPPPPGAYPPPPGAYPPPPGAYPPPPGAYPPQ----HGYPQPGGYPPPGGYPQH 89



 Score = 30.3 bits (65), Expect = 2.5
 Identities = 17/56 (30%), Positives = 18/56 (32%)
 Frame = +3

Query: 576 PPEXAXXPPRXXXGLXXAAPPPXXXSPPXXXXXXPXIKPGAGRXXXXRXXPPGGFP 743
           PP     PP        A PPP    PP      P   P  G        PP G+P
Sbjct: 43  PPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGYPQPGGYPPPGGYPQHGGYPPAGYP 98


>06_03_0175 +
           17553447-17553667,17555313-17555467,17555625-17555713,
           17556253-17556376,17556920-17556989,17557345-17557441,
           17559365-17559427,17559504-17559581,17559675-17559737
          Length = 319

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 54  IKGCQGVRXIHNSWKKXC*FQHXPXXIQAKS 146
           + G  G R  H+SW   C  QH    +Q KS
Sbjct: 16  LDGMSGSRKTHSSWTTSCTVQHSGYGLQVKS 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,223,065
Number of Sequences: 37544
Number of extensions: 227839
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)