Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_H01
         (982 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    31   1.7  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    31   1.7  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   2.9  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   2.9  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   6.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   6.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   6.7  

>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 21/72 (29%), Positives = 21/72 (29%)
 Frame = -1

Query: 754 GXCXGNPPGGXXRXXQXRPAPGLMXGFXXXXXGGEXXXGGGAAXXXPXXXRGGXXAXSGG 575
           G C G   GG        P P    G      GG    GGG     P    GG     GG
Sbjct: 32  GGCGGGCGGGCGGGGGCAPPPAPCGG--GCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGG 89

Query: 574 XXXGDXXXRGXG 539
              G     G G
Sbjct: 90  CGGGGGGCGGGG 101


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 21/72 (29%), Positives = 21/72 (29%)
 Frame = -1

Query: 754 GXCXGNPPGGXXRXXQXRPAPGLMXGFXXXXXGGEXXXGGGAAXXXPXXXRGGXXAXSGG 575
           G C G   GG        P P    G      GG    GGG     P    GG     GG
Sbjct: 32  GGCGGGCGGGCGGGGGCAPPPAPCGG--GCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGG 89

Query: 574 XXXGDXXXRGXG 539
              G     G G
Sbjct: 90  CGGGGGGCGGGG 101


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/65 (29%), Positives = 21/65 (32%)
 Frame = +3

Query: 564 PXXXPPEXAXXPPRXXXGLXXAAPPPXXXSPPXXXXXXPXIKPGAGRXXXXRXXPPGGFP 743
           P   PP     PP    G+    PPP    PP      P   PG          PP  +P
Sbjct: 299 PPPPPPGRTPGPP-GMPGMPPP-PPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 356

Query: 744 XHXPG 758
              PG
Sbjct: 357 SAGPG 361


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/65 (29%), Positives = 21/65 (32%)
 Frame = +3

Query: 564 PXXXPPEXAXXPPRXXXGLXXAAPPPXXXSPPXXXXXXPXIKPGAGRXXXXRXXPPGGFP 743
           P   PP     PP    G+    PPP    PP      P   PG          PP  +P
Sbjct: 309 PPPPPPGRTPGPP-GMPGMPPP-PPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 366

Query: 744 XHXPG 758
              PG
Sbjct: 367 SAGPG 371


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/69 (28%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
 Frame = +3

Query: 564 PXXXPPEXAXXPPRXXXGLXXAA-----PPPXXXSPPXXXXXXPXIKPGAGRXXXXRXXP 728
           P   P      PP    GL         PPP    PP      P   P  G        P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776

Query: 729 PGGFPXHXP 755
           PGGF    P
Sbjct: 777 PGGFKGGPP 785


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/69 (28%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
 Frame = +3

Query: 564 PXXXPPEXAXXPPRXXXGLXXAA-----PPPXXXSPPXXXXXXPXIKPGAGRXXXXRXXP 728
           P   P      PP    GL         PPP    PP      P   P  G        P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776

Query: 729 PGGFPXHXP 755
           PGGF    P
Sbjct: 777 PGGFKGGPP 785


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/69 (28%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
 Frame = +3

Query: 564 PXXXPPEXAXXPPRXXXGLXXAA-----PPPXXXSPPXXXXXXPXIKPGAGRXXXXRXXP 728
           P   P      PP    GL         PPP    PP      P   P  G        P
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359

Query: 729 PGGFPXHXP 755
           PGGF    P
Sbjct: 360 PGGFKGGPP 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,228,721
Number of Sequences: 27780
Number of extensions: 155274
Number of successful extensions: 260
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)