Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_G24
(986 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.035
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.14
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.33
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 31 0.33
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.33
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.0
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 28 2.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 7.1
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.035
Identities = 29/105 (27%), Positives = 34/105 (32%), Gaps = 4/105 (3%)
Frame = +3
Query: 660 PPPPXXXSXKSXXXXXXXXXXXXXXXXXXXSPPEXPPSXPXLXPTXXX*PXTXPPFFPLX 839
P PP +S +PP PPS P P+ P + PP P+
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP---PSL---PPSAPPSLPMG 442
Query: 840 XXGALXXXP--PXGXP-PXGXXXXPP-PXGXFXXPPXPXPGXLXP 962
A P P P P G PP P PP P P P
Sbjct: 443 APAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 31.9 bits (69), Expect = 0.14
Identities = 19/60 (31%), Positives = 21/60 (35%)
Frame = +1
Query: 739 SPGXPPLKXPPXAPXFXPPXPXNRXPXPPFSPXGXXGPFXXPPXXGFPXRGXGXPPPRXG 918
+P PPL PP AP PP P PP P P P P P + G
Sbjct: 443 APAAPPL--PPSAP-IAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDG 499
Score = 31.1 bits (67), Expect = 0.25
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = +1
Query: 742 PGXPPLKXPPXAPXFXPPXPXNRXPXPPFSPXGXXGPFXXPPXXGFPXRGXGXPP 906
P PP PP AP P P PP +P P P P PP
Sbjct: 425 PSAPP-SLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 29.5 bits (63), Expect = 0.76
Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Frame = +2
Query: 794 PXXLTGNLXPLFPPXGXXGPXPXPPXXXSPXGGXGXPP--PGGXVPXPPXTXP-GXPXPG 964
P + G P PP G PP P PP P P P P P P
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Query: 965 NXSXSPP 985
+ +PP
Sbjct: 452 SAPIAPP 458
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/70 (27%), Positives = 20/70 (28%)
Frame = +1
Query: 745 GXPPLKXPPXAPXFXPPXPXNRXPXPPFSPXGXXGPFXXPPXXGFPXRGXGXPPPRXGGS 924
G PP+ PP P R P G PP G PP S
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSS 382
Query: 925 XXPLNPPRGP 954
NPP P
Sbjct: 383 RAVSNPPAPP 392
Score = 28.3 bits (60), Expect = 1.8
Identities = 23/85 (27%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Frame = +2
Query: 752 PP*KXPLXPPPFXHPXXLTGNLXPLFPPXGXXGPXPXPPXXXSPXGGXGXPPPGG----- 916
PP PPP TG P P PP PP G
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413
Query: 917 --XVPXPPXTXPGXPXPGNXSXSPP 985
VP PP P P P +PP
Sbjct: 414 TPPVPTPPSLPPSAP-PSLPPSAPP 437
Score = 28.3 bits (60), Expect = 1.8
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = +1
Query: 742 PGXPPLKXPPXAPXFXPPXPXNRXPXPPFSPXGXXGPFXXPPXXGFPXRGXGXPPPRXGG 921
P PP P P P P PP P P P G P PP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS---APIAPPLPAGMP-AAPPLPPAAPAP 476
Query: 922 SXXPLNPPRGP 954
P P P
Sbjct: 477 PPAPAPAPAAP 487
Score = 25.8 bits (54), Expect = 9.4
Identities = 17/63 (26%), Positives = 18/63 (28%)
Frame = +2
Query: 776 PPPFXHPXXLTGNLXPLFPPXGXXGPXPXPPXXXSPXGGXGXPPPGGXVPXPPXTXPGXP 955
PPP P P+ P PP S G PP G PP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 956 XPG 964
G
Sbjct: 371 STG 373
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.14
Identities = 24/82 (29%), Positives = 27/82 (32%)
Frame = +2
Query: 740 PXGFPP*KXPLXPPPFXHPXXLTGNLXPLFPPXGXXGPXPXPPXXXSPXGGXGXPPPGGX 919
P PP P PP P +G P PP P P +P G P P G
Sbjct: 1037 PSTAPPVPIPTSTPPV--PKSSSG--APSAPPP-VPAPSSEIPSIPAPSGAPPVPAPSGI 1091
Query: 920 VPXPPXTXPGXPXPGNXSXSPP 985
P P + P P PP
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPP 1113
Score = 30.7 bits (66), Expect = 0.33
Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Frame = +2
Query: 740 PXGFPP*KXP-LXPPPFXHPXXLTGNLXPLFPPXGXXGPXPXP----PXXXSPXGGXGXP 904
P G PP P + PP P + + P+ P P P P P G P
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAP---SSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211
Query: 905 PPGGXVPXPPXTXPGXPXPGNXSXSPP 985
PP P P + P P + +PP
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 29.9 bits (64), Expect = 0.58
Identities = 23/84 (27%), Positives = 24/84 (28%)
Frame = +2
Query: 734 KXPXGFPP*KXPLXPPPFXHPXXLTGNLXPLFPPXGXXGPXPXPPXXXSPXGGXGXPPPG 913
K PP P PP P P P P P P P P P
Sbjct: 1106 KPSVAVPPVPAPSGAPPVPKPSVAA----PPVPVPSGAPPVPKPSVAAPPV-----PAPS 1156
Query: 914 GXVPXPPXTXPGXPXPGNXSXSPP 985
G P P + P P S PP
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPP 1180
Score = 28.3 bits (60), Expect = 1.8
Identities = 22/87 (25%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Frame = +2
Query: 740 PXGFPP*KXPLXPPPFXHPXX-LTGNLXPLFPPXGXXGPXPXP----PXXXSPXGGXGXP 904
P P + P P P P + P+ P P P P P +P G P
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124
Query: 905 PPGGXVPXPPXTXPGXPXPGNXSXSPP 985
P P P P P +PP
Sbjct: 1125 KPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Score = 27.5 bits (58), Expect = 3.1
Identities = 20/75 (26%), Positives = 20/75 (26%), Gaps = 1/75 (1%)
Frame = +2
Query: 740 PXGFPP*KXPLXPPPFXHPXXLTGNLXPLFPPXGXXGPXPXPPXXXSPXGGXGXPPPGGX 919
P P P P P P P P P PP P P G
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGA 1082
Query: 920 VPXP-PXTXPGXPXP 961
P P P P P P
Sbjct: 1083 PPVPAPSGIPPVPKP 1097
Score = 26.6 bits (56), Expect = 5.4
Identities = 17/59 (28%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Frame = +2
Query: 821 PLFPPXGXXGPXPXPPXXXSPXGGXGXPPP-----GGXVPXPPXTXPGXPXPGNXSXSP 982
P PP P P P P PP G P P T P P S +P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
Score = 26.2 bits (55), Expect = 7.1
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Frame = +1
Query: 751 PPLKXPPX-APXFXPPXPXNRXPXPPFSPXGXXGPFXXPPXXG---FPXRGXGXPPPRXG 918
P + PP AP PP P PP P P G P P P+
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS 1204
Query: 919 GSXXPLNPP 945
P+ PP
Sbjct: 1205 VGVPPVPPP 1213
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.33
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +1
Query: 742 PGXPPLKXPPXAPXFXPPXPXNRXPXPPFSPXGXXGPFXXPP 867
P P PP PP P P PP +P GP PP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 29.9 bits (64), Expect = 0.58
Identities = 22/73 (30%), Positives = 26/73 (35%)
Frame = +2
Query: 755 P*KXPLXPPPFXHPXXLTGNLXPLFPPXGXXGPXPXPPXXXSPXGGXGXPPPGGXVPXPP 934
P P P P ++ P PP P PP P G PPP P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPP-PPMSVPPPPSAPP---MPAGPPSAPPP----PLPA 1737
Query: 935 XTXPGXPXPGNXS 973
+ P P PG+ S
Sbjct: 1738 SSAPSVPNPGDRS 1750
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 30.7 bits (66), Expect = 0.33
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Frame = -1
Query: 896 PXPRX-GXPXXGGXXKGPXXPXGE---KGGXGXRLXGXGGXKXGAXGGXFRGG 750
P P+ G G GP G +GG G G GG G GG RGG
Sbjct: 117 PKPKTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGG 169
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.33
Identities = 20/63 (31%), Positives = 21/63 (33%)
Frame = +2
Query: 761 KXPLXPPPFXHPXXLTGNLXPLFPPXGXXGPXPXPPXXXSPXGGXGXPPPGGXVPXPPXT 940
K P PPP P+ PP G P PP G PPP P PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP----PPPPAV 785
Query: 941 XPG 949
G
Sbjct: 786 SAG 788
Score = 27.9 bits (59), Expect = 2.3
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +1
Query: 739 SPGXPPLKXPPXAPXFXPPXPXNRXPXPPFSPXGXXGPFXXPP 867
+P P+ PP AP P P P PP G P PP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPP----PPPPPGVAGAGPPPPPPP 781
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Frame = +2
Query: 833 PXGXXGPXPXPPXXXSPXGGXGXPPPGGXV----PXPPXTXPGXPXPGNXSXSP 982
P P P PP G PPP G P PP P G+ +P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Frame = +2
Query: 851 PXPXPPXXXSPXGGXG---XPPPGGXVPXPPXTXPGXPXPGNXSXSPP 985
P P PP P PPP + PP P P PG PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP---PPPPPPGVAGAGPP 776
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 1.0
Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = -3
Query: 984 GGDXEXFPGKGXPGXVXGGXGTXPPG-GGXPXPPXGEXXXGGXGKGPXXPXGGKRGXRXP 808
GG+ G G G GG P G GG P G GG G GP GG G P
Sbjct: 214 GGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGG--GLGGFGGGPGGFGGGPGGHGGP 271
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -1
Query: 905 GGXPXPRXGXPXXGGXXKGPXXPXGEKGGXGXRLXGXGGXKXGAXG 768
GG P G P GG GP G GG G G GG G G
Sbjct: 227 GGGPGGFEGGP--GGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 26.2 bits (55), Expect = 7.1
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 908 GGGXPXPRXGXPXXGGXXKGPXXPXGEKGGXGXRLXGXGGXKXGAXG--GXFRGG 750
G G P P G G G G GG G G G G G G F GG
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 954 GXPGXVXGGXGTXPPGGGXPXPPXGE 877
G PG GG G PGGG P G+
Sbjct: 78 GQPGGPGGGPGEGFPGGGFGFDPFGD 103
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 4.1
Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Frame = +1
Query: 751 PPLKXPPXAPXFXPPXPXNRXPXPPFSPXGXXGPFXXPPXXGFPXRGXGXPPPRXG-GSX 927
PP PP P PP P + P P +P P PP P PP S
Sbjct: 139 PPTSAPPR-PSIPPPSPASAPPIPSKAP---PIPSSLPP-PAQPAAPVKSPPSAPSLPSA 193
Query: 928 XPLNPPRGP 954
P PP+ P
Sbjct: 194 VPPMPPKVP 202
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 833 PXGXXGPXPXPPXXXSPXGGXGXPPPG 913
P G P P PP P PPPG
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 742 PGXPPLKXPPXAPXFXPPXPXNRXPXPP 825
PG PP PP P F PP ++ P PP
Sbjct: 6 PGNPP--PPPPPPGFEPP---SQPPPPP 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,615
Number of Sequences: 5004
Number of extensions: 26633
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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