Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_G19
(929 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 37 0.004
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 36 0.011
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 34 0.025
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 33 0.057
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 33 0.057
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 32 0.13
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.18
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 31 0.23
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 31 0.31
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.53
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.71
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 29 1.2
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 28 1.6
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 28 2.2
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 28 2.2
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.8
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 27 2.8
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 3.8
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 26 6.6
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 6.6
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 8.7
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 8.7
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 8.7
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.1 bits (82), Expect = 0.004
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 454 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGY 579
+L VSN+ F ++D D+K +F FG ++ + D RS G+
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGF 382
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 35.5 bits (78), Expect = 0.011
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 433 TITTGPTKLLVSNLDFGVSDSDIKELF-SEFGILKSASVHYDRSGRSLG 576
++ + +K++VSNL V+++ +KELF G K S+ Y +GRS G
Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKG 97
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 34.3 bits (75), Expect = 0.025
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 457 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGY 579
+ V NL + SD ++ +LF++ G + A + Y+ +GRS G+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGF 322
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 472 LDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLG 576
L + V D+K+LF + G + A + ++ GRS G
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRG 224
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 33.1 bits (72), Expect = 0.057
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +1
Query: 427 SGTITTGPTKLLVSNLDFGV--SDSDIKELFSEFGILKSASV-HYDRSGRSLGY 579
+ T T P L V NLD + + ++ELFS+FG +KS ++ Y + S GY
Sbjct: 411 TSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGY 464
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.1 bits (72), Expect = 0.057
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 418 QRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGY 579
QR+ G + + NLD + + + + FS FG + S V D G + GY
Sbjct: 157 QRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGY 210
Score = 32.7 bits (71), Expect = 0.076
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +1
Query: 409 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGY 579
R+ Q + T + + NLD +++ + +LF +FG + S S+ D++ + G+
Sbjct: 247 RERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGF 303
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 457 LLVSNLDFGVSDSDIKELFSEFG-ILKSASVHYDRSGRSLGY 579
L V NLDF +D+D+KE F + G I + + ++ +G+ G+
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGF 271
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 31.5 bits (68), Expect = 0.18
Identities = 22/52 (42%), Positives = 25/52 (48%)
Frame = +1
Query: 211 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDV 366
R GGG+ R G GG GF G RGR RGG +S N +RG V
Sbjct: 444 RTGGGS-----RGGRGGFGGRGGFGGRGGFGGGRGRGRGG-ARSGNPNRGSV 489
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.1 bits (67), Expect = 0.23
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 412 KLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFG-ILKSASVHYDRSGRSLGY 579
+ ++ G T L V NLD V + + + FS G ++K+ V D +GRS GY
Sbjct: 86 RASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGY 142
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 30.7 bits (66), Expect = 0.31
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 457 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGY 579
+ + NLDF +++ DI +FSEFG ++ D+ +G+S G+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGF 74
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.53
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 160 DQIEMALDDIIKANK---KTRIGGGAGRKFDANKRTGRGGGAGFRSNRSG--GVQRGRNR 324
D++ ++ D +I ++ K + G K N GRGG GFR R G G G +R
Sbjct: 100 DKVYLSGDKLIPLDRFLPKPKTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSR 159
Query: 325 GG 330
GG
Sbjct: 160 GG 161
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = +1
Query: 220 GGAGRKFDANKRTGRGGGA--GFRSNRSGGVQ---RGRNRGG 330
GG+ F N R G GGG+ GF GG + RG +RGG
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 220 GGAGRKFDANKRTGRGGG-AGFRSNRSGGVQRGRNRGG 330
G AGR R GRGG GF N GG G +RGG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGF-GGGSRGG 169
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.71
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +1
Query: 223 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 330
G GR R GRGG G R SGG RG +GG
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGG--RGGAKGG 70
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 211 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQ 309
R G GR R GRGG +G R GG +
Sbjct: 40 RGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +3
Query: 27 GILKIFFCIFVTV----YLGRKSSKRIVFVFDLIFIEKIF 134
G++ + FC+F+++ + RK VFV LIF+E IF
Sbjct: 532 GVIHMTFCLFLSLSNYRFFKRKLDIYAVFVPSLIFLEAIF 571
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 199 NKKTRIGGGAGRK--FDANKRTGRGGGAGFRSNRSGGVQR 312
N+ GGG GR+ + + G G G+R+NR G R
Sbjct: 78 NRGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRGFGQWR 117
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 229 GRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 330
G + + N+ GGG G ++N GG + G + GG
Sbjct: 72 GGRREYNRGGHYGGGEGRQNNYRGGREGGYSNGG 105
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 457 LLVSNLDFGVSDSDIKELFSEFGILKS 537
L +SN+D VS++DIK LF + + +
Sbjct: 75 LFISNIDPEVSENDIKYLFQRYNFISA 101
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 469 NLDFGVSDSDIKELFSEFGILKSASVHY 552
+LD V D DI+ LFS F I KS +Y
Sbjct: 473 SLDETVCDKDIQALFSIFNINKSVDQYY 500
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 457 LLVSNLDFGVSDSDIKELFSEFGILK 534
L VSNL G S S I LFS +G +K
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVK 27
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 445 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR 567
GPT +++ NL G S D+ FG + + V+ D G+
Sbjct: 98 GPTNVVIENLAPGTSSDDVAATLLNFGEILNCQVN-DSQGK 137
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 457 LLVSNLDFGVSDSDIKELFSEFGIL 531
LLV N +G S ++ LFS FG L
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGEL 532
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 457 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGY 579
L V L+ D D++ +FS FG + S V D+ +G SL Y
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQY 287
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 6.6
Identities = 21/89 (23%), Positives = 33/89 (37%)
Frame = +1
Query: 163 QIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKS 342
Q + L D +K +GG + + RG G R G + RNR G
Sbjct: 48 QSDFNLFDRQFTKRKFDVGGRRVKGTEGKPGVSRGVGEELRRRTIGAELKKRNRSGAIID 107
Query: 343 TNYSRGDVNSTWKHDMFNDFGERKLQRNS 429
+ + + + + M F R+ QR S
Sbjct: 108 RRFGENNPHLSVEEKMLERF-SREQQRRS 135
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 8.7
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 223 GAGRKFDANKRTGRGGGAGFRSNR-SGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFND 399
G G F +N T G G+G +N SGG+ N T ST G + K F+
Sbjct: 282 GGGSAFGSNT-TNTGFGSG--TNNASGGLFGQNNNTTSTPSTGLFGGSTFNQQK-PAFSG 337
Query: 400 FGERKLQRNSGTIT 441
FG N+GT T
Sbjct: 338 FGSTTNTTNTGTGT 351
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/42 (26%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 457 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGY 579
++V+ + ++ +++LF++FG +K+ ++ D R+G GY
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGY 53
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 232 RKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVN 369
R+ N T G+G R R RGR RGG + Y+R N
Sbjct: 367 RERSLNMETFGVAGSGNRGRRG----RGRGRGGRGRGRGYARNQYN 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,056
Number of Sequences: 5004
Number of extensions: 64376
Number of successful extensions: 196
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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