Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_G17
         (943 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    32   0.76 
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080...    28   9.4  
08_02_1084 - 24232968-24234779                                         28   9.4  
08_01_0202 - 1638978-1639571                                           28   9.4  
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078           28   9.4  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 31.9 bits (69), Expect = 0.76
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 873 PPXXPPPXPXXREPLFRXPPP 935
           PP  PPP P   +P F  PPP
Sbjct: 546 PPPPPPPPPSGNKPAFSPPPP 566


>11_04_0158 +
           14207463-14207629,14207724-14207774,14207874-14208002,
           14209342-14209447,14209491-14209601,14210042-14210098,
           14210903-14211727
          Length = 481

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 642 PLKSXVPKPDRTYKXPG-VSPWXXPXCAPLFRP 737
           PLK   P P + +  PG   P   P  +PLF P
Sbjct: 251 PLKQQQPPPPQLFNWPGHAPPQLPPGASPLFPP 283


>08_02_1084 - 24232968-24234779
          Length = 603

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 873 PPXXPPPXPXXREPLFRXPPP 935
           PP  PPP P  + P  + PPP
Sbjct: 61  PPSLPPPLPQKQPPSQQLPPP 81


>08_01_0202 - 1638978-1639571
          Length = 197

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 934 GGGXRKRGSRXXGXGGGXXGG 872
           GGG R  G R  G GGG  GG
Sbjct: 95  GGGGRYGGDRGYGGGGGGYGG 115


>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
          Length = 455

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 934 GGGXRKRGSRXXGXGGGXXGG 872
           GGG R+RG    G GGG   G
Sbjct: 97  GGGGRRRGGHGGGAGGGVGAG 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,264,888
Number of Sequences: 37544
Number of extensions: 323748
Number of successful extensions: 1903
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1825
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)