Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_G17
         (943 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    29   6.4  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    29   6.4  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    29   6.4  

>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = +1

Query: 613 PP*PAXXKIDPSSXRCRNPTGLIRXRAFPPGXXPXAPPCSDPAXLP 750
           PP P   K+DPS      P   +     PP   P APP   P   P
Sbjct: 324 PPPPPPMKLDPSPQPAATP---VEITEIPPIISPPAPPPPPPPPPP 366


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 852 LGXXXXNPPXXPPPXPXXREPLFRXPPP 935
           +G    +PP  PPP P    P    PPP
Sbjct: 66  VGRPTESPPLPPPPLPLSNPPAKPTPPP 93


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 852 LGXXXXNPPXXPPPXPXXREPLFRXPPP 935
           +G    +PP  PPP P    P    PPP
Sbjct: 288 VGRPTESPPLPPPPLPLSNPPAKPTPPP 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,489,653
Number of Sequences: 27780
Number of extensions: 241049
Number of successful extensions: 785
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)