Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_G16
(1061 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.090
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.16
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 31 0.27
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.1
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 1.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 5.9
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.7 bits (71), Expect = 0.090
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Frame = +1
Query: 658 PXHPX--PPXXGXXXAPPCXXXPPPSPPPXGRXXRGLXXXPFXXPGRPFPXFPPXXXGSP 831
P HP PP APP P P PPP P P P PP +P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMS--------VPPPPSAPPMPAGPP---SAP 1731
Query: 832 XPPLP 846
PPLP
Sbjct: 1732 PPPLP 1736
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = +1
Query: 652 SVPXHPXPPXX--GXXXAPPCXXXPPPSPPP 738
S P P PP APP PP +PPP
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.16
Identities = 23/71 (32%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Frame = +1
Query: 652 SVPXHPXPPXX---GXXXAPPCXXXPPPSPPPXGRXXRGLXXXPFXXP---GRPFPXFPP 813
S+P P PP G PP PP PPP G P P P PP
Sbjct: 335 SLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNP-PAPPP 393
Query: 814 XXXGSPXPPLP 846
G P LP
Sbjct: 394 AIPGRSAPALP 404
Score = 31.5 bits (68), Expect = 0.21
Identities = 26/70 (37%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = +1
Query: 652 SVPXHPXPPXXGXXXAPPCXXXPPPSPPPXGRXXRGLXXXPFXXPGRPFPXFPPXXXGSP 831
S P P PP APP PPS PP G P P P PP G P
Sbjct: 413 STPPVPTPPSL-PPSAPPSL---PPSAPP--SLPMGAPAAPPLPPSAPIA--PPLPAGMP 464
Query: 832 -XPPLPXXRP 858
PPLP P
Sbjct: 465 AAPPLPPAAP 474
Score = 26.2 bits (55), Expect = 7.8
Identities = 18/70 (25%), Positives = 20/70 (28%)
Frame = +1
Query: 652 SVPXHPXPPXXGXXXAPPCXXXPPPSPPPXGRXXRGLXXXPFXXPGRPFPXFPPXXXGSP 831
S P P P A PP PPP R RG P PP +
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347
Query: 832 XPPLPXXRPG 861
+P G
Sbjct: 348 AGSIPLPPQG 357
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 31.1 bits (67), Expect = 0.27
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +1
Query: 658 PXHPXPPXXGXXXAPPCXXXPPPSPPPXGRXXRGLXXXPFXXPGRPFPXFPPXXXGSPXP 837
P P PP G P PP PP G+ P PG P P G+ P
Sbjct: 501 PGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGM---PAPFPGYPAVPAMPGIPGATAP 557
Query: 838 P 840
P
Sbjct: 558 P 558
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 1.1
Identities = 21/67 (31%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Frame = +1
Query: 652 SVPXHPXPPXXGXXXAPPCXXXPPPSP---PPXGRXXRGLXXXPFXXPGRPFPXFPPXXX 822
S P P P APP PP P PP + + P P P PP
Sbjct: 142 SAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP-SAPSLP-SAVPPMPP 199
Query: 823 GSPXPPL 843
P PPL
Sbjct: 200 KVPPPPL 206
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = +1
Query: 658 PXHPXPPXXGXXXAPPCXXXPPPSPPPXGRXXRGLXXXPFXXPGRPFPXFPPXXXGSPXP 837
P P PP PP P PS PP P P P PP +P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPS--PASAPPIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 838 PLP 846
P
Sbjct: 183 SPP 185
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -1
Query: 857 GRXXGRGGXGDPXXXGGKXGNGRPGXXNGXXXR 759
G GRGG G GG G GR G +G R
Sbjct: 454 GGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNR 486
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 658 PXHPXPPXXGXXXAPPCXXXPPPSP 732
P +P PP PP PPP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 5.9
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = +1
Query: 655 VPXHPXPPXXGXXXAPPCXXXPPPSPPPXGRXXRGLXXXPFXXPGRPFPXFPPXXXGSPX 834
+P PP APP P S PP + G P P P P S
Sbjct: 1026 LPSADAPPIPVPSTAPPVPI--PTSTPPVPKSSSGAPSAPPPVPA-PSSEIPSIPAPSGA 1082
Query: 835 PPLP 846
PP+P
Sbjct: 1083 PPVP 1086
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,302
Number of Sequences: 5004
Number of extensions: 22649
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 559212080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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