Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_G15
(947 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.44
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 32 0.77
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 3.1
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 4.1
03_02_0862 + 11886576-11886624,11886789-11887354 29 5.4
12_02_0299 - 17051570-17052474,17053542-17053755 29 7.1
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 29 7.1
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 29 7.1
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 7.1
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 28 9.4
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 28 9.4
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.44
Identities = 20/69 (28%), Positives = 21/69 (30%)
Frame = +3
Query: 429 PXXXXXPPPFXPXKXFXXPPPXXXKXFPPXGFPXXXXXXKXXXXXKXIXXGSQKGGXNXP 608
P PPP P PPP PP P K G +KGG P
Sbjct: 321 PAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPP 380
Query: 609 PXGGXKKXP 635
P G P
Sbjct: 381 PPKGGASRP 389
Score = 31.1 bits (67), Expect = 1.3
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Frame = +1
Query: 691 PPXGGXXXPWXFXPXXXLLXPPPPXGGXXXXFFSXPXXARGFFXLPPXXKXXXPXPPPQI 870
PP P P PPPP G P A+G PP P PPP
Sbjct: 318 PPKPAAAAPPPPPPPKAAPPPPPPKGPPP------PPPAKGPPPPPPPKGPSPPPPPPPG 371
Query: 871 XKX--PRXXPPLGGLXAP 918
K P PP GG P
Sbjct: 372 GKKGGPPPPPPKGGASRP 389
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 31.9 bits (69), Expect = 0.77
Identities = 24/97 (24%), Positives = 27/97 (27%)
Frame = +1
Query: 607 PPGGXXKKXLFSXPPXXXXGXXGXXXGXPPXGGXXXPWXFXPXXXLLXPPPPXGGXXXXF 786
PPGG P G PP P P + PPP GG
Sbjct: 45 PPGGNGPVPSSIRAPQAPPPGARPFPGSPPPPSQPPPPFARPAAPVQQQPPPFGGPPGVM 104
Query: 787 FSXPXXARGFFXLPPXXKXXXPXPPPQIXKXPRXXPP 897
S P + P PP Q + P PP
Sbjct: 105 PSQPLQQQQQQQRPAFGGPPSGAPPAQAQRTPFGGPP 141
Score = 28.7 bits (61), Expect = 7.1
Identities = 25/113 (22%), Positives = 32/113 (28%)
Frame = +3
Query: 429 PXXXXXPPPFXPXKXFXXPPPXXXKXFPPXGFPXXXXXXKXXXXXKXIXXGSQKGGXNXP 608
P PPP P F P + PP G P + + + G +
Sbjct: 68 PFPGSPPPPSQPPPPFARPAAPVQQQPPPFGGPPGVMPSQPLQQQQQQQRPAFGGPPSGA 127
Query: 609 PXGGXKKXPFFXXPLPGXXXXXXXXGXPPXWGPXXTLXFXTXPXXFXXPPPGG 767
P ++ P F P G PP F P PPP G
Sbjct: 128 PPAQAQRTP-FGGPPSAMSQGPLPFGGPPAAVASQPPPFGGPPVAAAQPPPFG 179
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/72 (30%), Positives = 25/72 (34%)
Frame = +1
Query: 694 PXGGXXXPWXFXPXXXLLXPPPPXGGXXXXFFSXPXXARGFFXLPPXXKXXXPXPPPQIX 873
P G P P L PPPP G P F P + P PPPQ+
Sbjct: 36 PAYGHMPPPQGAPPPFLAPPPPPPPGPP------PPHQPQFNFGPGPPQQQQPPPPPQMY 89
Query: 874 KXPRXXPPLGGL 909
P PP G+
Sbjct: 90 YQPPPPPPPYGV 101
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.5 bits (63), Expect = 4.1
Identities = 17/58 (29%), Positives = 19/58 (32%)
Frame = +1
Query: 691 PPXGGXXXPWXFXPXXXLLXPPPPXGGXXXXFFSXPXXARGFFXLPPXXKXXXPXPPP 864
PP PW P PPPP ++ P A G PP P P P
Sbjct: 427 PPGSYAPVPWGQPPPYASYPPPPPGSS----MYNPPPPAPGQATPPPYGVQYAPPPAP 480
>03_02_0862 + 11886576-11886624,11886789-11887354
Length = 204
Score = 29.1 bits (62), Expect = 5.4
Identities = 19/76 (25%), Positives = 20/76 (26%), Gaps = 3/76 (3%)
Frame = -1
Query: 902 PKGGXXRGXXXIWGGGXGXXXFXXGGXXKNP---LAXXGXEKXNXXXPPXGGGGXKXXXX 732
P G G +WGGG G P GGGG
Sbjct: 64 PTAGRSGGGGAVWGGGGSGTPMAGSGAAARPGGGARQGAATVARRRDAAGGGGGGPAAGS 123
Query: 731 GXKXQGXXXPPXGGXP 684
G G PP G P
Sbjct: 124 GTWQGGGGTPPRSGVP 139
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.7 bits (61), Expect = 7.1
Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Frame = +1
Query: 751 PPPPXGGXXXXFFSXPXXARGFFXLP---PXXKXXXPXPPPQIXKXPRXXPPLGGLXAP 918
PPPP F P F LP P P PPP P PPL L P
Sbjct: 290 PPPPPPAFPFPFPQLPPLPH-FPPLPSFYPSPPPPPPPPPPPPPSFPWPFPPLAPLFPP 347
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 28.7 bits (61), Expect = 7.1
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Frame = +3
Query: 381 NPPPKXXX*XXQRNX-FPXXXXXPPPFXPXKXFXXPPPXXXKXFPPXGFP 527
+PPP+ + P PPP P PP FPP G P
Sbjct: 70 HPPPRVQHHHHHHHQQLPAPTPPPPPPPPLPQHRLEPPPPHYGFPPRGHP 119
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 28.7 bits (61), Expect = 7.1
Identities = 18/62 (29%), Positives = 20/62 (32%)
Frame = -1
Query: 899 KGGXXRGXXXIWGGGXGXXXFXXGGXXKNPLAXXGXEKXNXXXPPXGGGGXKXXXXGXKX 720
+GG RG GGG G G G PP GGGG G +
Sbjct: 5 RGGGGRGRGRGRGGGRGGGGGDGRGGGYGGAGGGGVGGRGGRGPPGGGGGRGYEPGGGRG 64
Query: 719 QG 714
G
Sbjct: 65 YG 66
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.7 bits (61), Expect = 7.1
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +2
Query: 428 PXXXXXPPPXXPXKXXXXPPPXXXKXFSPQXVPP 529
P PPP P PPP K +P PP
Sbjct: 357 PPPPPPPPPPPPPPPRPPPPPPPIKKGAPPPAPP 390
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +3
Query: 849 PXAPXPNXXXPPXXPPLGGFXRPXXXNXXXXXP 947
P +P P P PP GGF P N P
Sbjct: 552 PPSPFPQTGPTPGMPPAGGFGVPGSGNMTAMRP 584
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.3 bits (60), Expect = 9.4
Identities = 20/56 (35%), Positives = 21/56 (37%)
Frame = +1
Query: 751 PPPPXGGXXXXFFSXPXXARGFFXLPPXXKXXXPXPPPQIXKXPRXXPPLGGLXAP 918
PPPP GG P G PP P P I P PP+GGL P
Sbjct: 1111 PPPPPGGITGVPPPPPIGGLGGHQAPP-----APPLPEGIGGVP-PPPPVGGLGGP 1160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,695,851
Number of Sequences: 37544
Number of extensions: 438200
Number of successful extensions: 1256
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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