Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_G14
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    37   0.003
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    33   0.056
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    31   0.17 
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    30   0.39 
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    28   2.1  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    27   2.8  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    27   3.7  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    27   4.9  
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    27   4.9  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   6.4  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   8.5  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 387 FRRMDDDGSKLLNKEEFLYGIKETGLELNKSEAEELFSQFDTDSSGSISLDEF 545
           F+  D DG+  +  EE  + +   G  L++ E  ++  + DTD  G I+ +EF
Sbjct: 91  FKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEF 143



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +3

Query: 399 DDDGSKLLNKEEFLYGIKETGLELNKSEAEELFSQFDTDSSGSISLDEFLIKIRPPMSES 578
           D DG+  +   E    ++  G     +E +++ ++ D D +G+I   EFL  +   M ++
Sbjct: 24  DQDGN--ITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDT 81


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 33.1 bits (72), Expect = 0.056
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 381 RIFRRMDDDGSKLLNKEEFLYGIKETGLELNKSEAEELFSQFDTDSSGSISLDEFL 548
           R F   DDD +  ++        KE    ++  E E +  +FD D  G I+  EF+
Sbjct: 114 RAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDGEINEQEFI 169



 Score = 31.1 bits (67), Expect = 0.23
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
 Frame = +3

Query: 375 LGRIFRRMDDDGSKLLNKEEFLYGIKETGLELNKSEAEELFSQFDTDSSGSISLDEFL-- 548
           +   F+  D D    ++  E    ++  G    KSE  ++   FD    G + +++F+  
Sbjct: 39  INEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRV 98

Query: 549 ----IKIRPPMSESRR 584
               I  R P+ E +R
Sbjct: 99  MTEKIVERDPLEEIKR 114


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +3

Query: 270 EELMQKSARAMTQATDPLEKLRLLCLSRGASGILGLGRIFRRMDDDGSKLLNKEEFLYGI 449
           E + ++  +     +  +++   L +   AS  L   R+F  +D+DG   ++ +EF+  +
Sbjct: 24  ERIRKRFIKIDANQSGSIDRNEFLSIPSVASNPLA-SRLFSVVDEDGGGDVDFQEFINSL 82

Query: 450 KETGLELNKSEAEEL-FSQFDTDSSGSISLDEFLIKIR 560
               +  NK E  +  F  +D D  G IS  E  + ++
Sbjct: 83  SVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLK 120


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 372 GLGRIFRRMDDDGSKLLNKEEFLYGIKETGLELNKSEAEELFSQFDTDSSG 524
           G+ ++FR  +   S +LN+ EF   +   GL  +  E   LF +      G
Sbjct: 488 GITKVFRHFEKKKSNMLNEVEFYAALASLGLVYDTEEGTALFHRAANSEEG 538


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 156 SVLIIISSKTLLGYHYFNSAYK*PIRLTRYGRDDKTSKS*GIPYSXVV 13
           SVLI  S    L Y YF+ A+   +       D +T  S GI Y  VV
Sbjct: 77  SVLIEASDFEALAYEYFSIAHSQGVHHAEVFFDPQTHTSRGISYDVVV 124


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +3

Query: 714 LXRFPPXLSRWTAXGRSLXSXDPSXPXGXXXXLXLAYDXSXSXPNXLXPNL 866
           + RF    +RW     SL S   + P G      L +    + PN L P L
Sbjct: 295 ITRFGTLTARWKTGVWSLGSWGIASPRGANSSFSLTWQQMKAIPNSLVPQL 345


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 207 KPKTSSNIAWHRPMSAGSVQEEELMQK 287
           KPK  S ++W+  +  GS +E EL+ K
Sbjct: 56  KPKKDSLLSWNILLKKGSYKENELLAK 82


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +2

Query: 167 GCNVILNSKNVFRKTE--NIFQHCVAQTDVCWFRPGGRADA 283
           GC  +    N+    E   +F+   A  + CW  PG  A+A
Sbjct: 331 GCRYVAEGSNMGSSAEAVEVFEKSRASGEGCWLAPGKAANA 371


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 424 TKKNSFMASRKQGWNLIKVKPKNSSVNSTQTVVAQSVLMNSLLKSVLP 567
           + +NS  +  K+ +   +V PK    NS  T  AQ V   +   SVLP
Sbjct: 32  SSRNSSSSLVKRSYVSSRVSPKKPQHNSDATSSAQKVANKTHTSSVLP 79


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 462 LELNKSEA--EELFSQFDTDSSGSISLDEF 545
           L LN S    EE F + D D SG +S +EF
Sbjct: 326 LHLNASMEFLEETFQKADADHSGKLSFEEF 355


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 444 HKGIL-LCSVVYFHHHPCDGKFFQVPRSLKHLGT 346
           H+G++ +C++VY        KF + P++++ L T
Sbjct: 686 HRGLVCICNIVYSKDQEIFNKFIKTPKAVETLRT 719


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,948
Number of Sequences: 5004
Number of extensions: 52017
Number of successful extensions: 161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)