Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_G13
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    29   1.2  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   4.8  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   6.3  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    26   6.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   8.3  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   8.3  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    26   8.3  
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces...    26   8.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   8.3  

>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 558 TRQTLPGLNPARSYAPIGRATWSP-RARAGQKSALGN 665
           T Q+ P  NPA   +P+G A+ SP R+  G  + +G+
Sbjct: 343 TPQSSPNFNPAMRRSPVGAASRSPSRSTIGISNRIGS 379


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 99  LNTIAYYRWLIFFFSFSNF 155
           L+ I Y+ W  FFFSF ++
Sbjct: 256 LSQINYFLWFFFFFSFPSY 274


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 642 RREPEGTTSLSRSEHMNVRDST 577
           RR PEG T L   E+MN+++ T
Sbjct: 842 RRFPEGITLLDPVENMNIKEPT 863


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 522 CPNTITVGWPGQTRQTLPGLNPARSYAPIGRATWSPRARAGQKSALG-NYISPPGLREGS 698
           C ++  + WPG +RQ L  L+P   ++  G         A + ++LG  Y+    L   S
Sbjct: 294 CFSSTPIPWPGFSRQALKNLSPMLHFSFHGMLMIVTEWAAYEMTSLGAGYLGTAPLASQS 353

Query: 699 V 701
           +
Sbjct: 354 I 354


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 293  QCAQVAIGCSRTAHQTAMRGSTKPSPQ-LATLTPKVRAFVERSAA 424
            Q A   I C  +A+ T  +  T      L T  P+VRAF+E S A
Sbjct: 1848 QAAYATIACFISAYDTPAKIVTPVYVSILKTYQPEVRAFIEFSLA 1892


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 352 PSHSSLVGGAAASNRHLST--LCRLPHVVFGDGLKM 251
           PS ++L GG A+ +  LST  L R PH    +G ++
Sbjct: 307 PSRATLTGGYASGSIGLSTPGLSRAPHYELDNGNRL 342


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 572 ARVESRTFICSDRESDVVPSGSRRPEVRPGELHLPPGIT 688
           AR ++ TF     E DV+ SGS    V      + PG T
Sbjct: 455 ARGQNSTFSYRREEIDVMSSGSANKHVNSSRQRVVPGAT 493


>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 337 LVGGAAASNRHLSTLCRLPHVVFGDGLKMQH 245
           +VG + AS    STLC+L H +F +G  + H
Sbjct: 7   IVGVSGASCSGKSTLCQLLHAIF-EGSSLVH 36


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 18   SHYRESLRFDINNFVFFESLLLNGLYRLNTIAYYRWLIF 134
            S ++E   FD ++F F   +L N LYR   +  + W  F
Sbjct: 4063 SSWKEPCYFDDSDFYFGTKILCNILYRNVHLEEFSWGTF 4101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,327,516
Number of Sequences: 5004
Number of extensions: 64995
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)