Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_G13
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1240 - 28612250-28613704 33 0.40
02_04_0593 + 24177897-24178182,24178442-24178509,24178617-241788... 31 0.94
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 30 2.2
04_04_0419 + 25086456-25086768,25087302-25087369,25087458-250876... 30 2.2
04_04_0140 - 23073032-23073130,23073270-23073338,23073448-230735... 30 2.9
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 29 6.6
09_01_0183 - 2652173-2653924 28 8.7
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251... 28 8.7
06_03_1301 - 29159262-29159810,29160360-29160493,29160615-291607... 28 8.7
>06_03_1240 - 28612250-28613704
Length = 484
Score = 32.7 bits (71), Expect = 0.40
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 285 RRHNVLKWRLDAAAPPT--KLLCEGRRSLLHSWPLSLQRFARSWSAALLCASQSTCTYAT 458
RRH VL +RL + PPT LL ++L S LS S+ AA+ C + +A
Sbjct: 97 RRHAVLSFRLLDSLPPTHPHLLSTPALAVLLSTALSASAPGASFDAAVTCFDSAARVWAR 156
Query: 459 APRQ 470
A R+
Sbjct: 157 AGRE 160
>02_04_0593 +
24177897-24178182,24178442-24178509,24178617-24178840,
24179221-24179304,24180183-24180396,24181242-24181418,
24181507-24181626,24181854-24181998,24182055-24182065,
24182222-24182314
Length = 473
Score = 31.5 bits (68), Expect = 0.94
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = +2
Query: 560 PADVARVESRTFICSDRESDVVPSGSRRPEVRPGELHLPP 679
PAD+ R F S ES +V GS R E PGELH P
Sbjct: 137 PADLMRAVVPVFPPS--ESKIVREGSLRGERNPGELHCAP 174
>04_04_0751 -
27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/49 (42%), Positives = 24/49 (48%)
Frame = -3
Query: 785 RERRSPPGPIENGITYIVRXXMQPGNLSDTAFS*SRGGDVVPQGGLLAG 639
R RR P E G YI R + P + A SRGGDV+P G AG
Sbjct: 473 RRRRQCPLFAEMGPIYIFREPIGPERMGRLA---SRGGDVLPSFGNGAG 518
>04_04_0419 +
25086456-25086768,25087302-25087369,25087458-25087681,
25087929-25088012,25088593-25088806,25089252-25089428,
25089526-25089645,25089865-25089991,25090104-25090130,
25090526-25091007
Length = 611
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +2
Query: 560 PADVARVESRTFICSDRESDVVPSGSRRPEVRPGELHLPP 679
PAD+ R F S ES++V G R E PGELH P
Sbjct: 146 PADLMRAVVPVFPPS--ESNIVREGRLRGERNPGELHCAP 183
>04_04_0140 -
23073032-23073130,23073270-23073338,23073448-23073539,
23073637-23074550,23074646-23074779,23075003-23075058,
23077556-23077646
Length = 484
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -2
Query: 429 HRAALRSTNARTFGVRVASCGEGFVDPRIAVWWAVRLHPI 310
HR+ L + V GEG +PR A WW H +
Sbjct: 35 HRSDLSMVTSSVLPKVVDDAGEGEANPRRAKWWYATFHSV 74
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 280 EEDGTMCSSGDWMQPHRPPNCYARVDEAFSTAGHSHSKGSRVRGAQR 420
++DG M G +QP RP + R D+ + G + SK +RG +R
Sbjct: 417 DDDGGMFGQGKGVQPGRPGSAGMRSDDGGDSDG-ARSKLVSLRGGRR 462
>09_01_0183 - 2652173-2653924
Length = 583
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 373 LWRRLRRPSHSSLVGGAAASNRHLSTLCRLPH-VVFGDG 260
L R L SHS+L AAA+ HL+T C VVF +G
Sbjct: 207 LLRLLDASSHSALRDRAAATVAHLATACVASRKVVFDEG 245
>08_02_1063 +
24024030-24024506,24024803-24024856,24024965-24025118,
24025314-24025388,24025511-24025788,24026023-24026253,
24026522-24026620,24026740-24026889,24027830-24027976,
24028525-24028575,24028647-24028819,24029018-24029147,
24029361-24029458,24029655-24029892,24030634-24030837,
24031003-24031083,24031296-24031535
Length = 959
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -2
Query: 708 SVGHCLLVIPGGRCSSPGRTSGRREPEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLS 532
SVG ++V+PG R + G R +SL+ + + SAGS+ N +++
Sbjct: 413 SVGDYIVVLPGDRVPADGVVKSGRSTVDESSLTGEPMPVTKIAGTEVSAGSINLNGKIT 471
>06_03_1301 -
29159262-29159810,29160360-29160493,29160615-29160750,
29161031-29161347,29161872-29161944
Length = 402
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 604 RSGERRGPLGLAPARSPPWGTTSPPRDYEKAVSD 705
RS RRG +AP +PP + SPP K VS+
Sbjct: 18 RSSRRRGGDAIAPKSAPP--SPSPPPRLRKTVSE 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,539,985
Number of Sequences: 37544
Number of extensions: 527162
Number of successful extensions: 1911
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1911
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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