Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_G09
         (1065 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 20/73 (27%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
 Frame = +1

Query: 856  AXPXXXPGXXXXXXXPXPRXNXXGXXXVPTKKXFSPXXPRXXXPXEXXSRP--XPQGPPX 1029
            A P   PG       P    +      VPT     P  P    P    S P   P  PP 
Sbjct: 390  APPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPL 449

Query: 1030 P--XXXTPYVPXG 1062
            P      P +P G
Sbjct: 450  PPSAPIAPPLPAG 462


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +1

Query: 709 PVSCPAXXXLGPRFPNXXTXXRPXIPPTPGXXKXLXXPXXPPPP 840
           P   PA   + P  P       P  PP PG       P  PPPP
Sbjct: 742 PTPAPAPIPVPP--PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 20/70 (28%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
 Frame = +1

Query: 685  FGXXXKDXPVSCPAXXXLGPRFPNXXTXXRPX----IPPTPGXXKX-LXXPXXPPPPRPX 849
            FG      PVS P         P       P     +PP P         P  PPPP P 
Sbjct: 1678 FGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPA 1737

Query: 850  FXAXPXXXPG 879
              A     PG
Sbjct: 1738 SSAPSVPNPG 1747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,403
Number of Sequences: 5004
Number of extensions: 14816
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 561209266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)