Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_G09
(1065 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 34 0.20
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.46
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.46
U55364-13|AAM29677.1| 250|Caenorhabditis elegans Hypothetical p... 32 0.80
U55364-12|AAA97977.2| 260|Caenorhabditis elegans Hypothetical p... 32 0.80
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 32 0.80
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.8
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 30 3.2
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 5.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.6
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 7.4
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical protein
T05A1.2 protein.
Length = 300
Score = 33.9 bits (74), Expect = 0.20
Identities = 28/93 (30%), Positives = 29/93 (31%), Gaps = 3/93 (3%)
Frame = +1
Query: 763 TXXRPXIPPTPGXX-KXLXXPXXP--PPPRPXFXAXPXXXPGXXXXXXXPXPRXNXXGXX 933
T RP P PG K P P PPP P P PG P G
Sbjct: 117 TPGRPGAPGAPGHPGKPPQSPCEPLTPPPCPACPPGPPGAPGAPGKPGSEGP-PGPPGHD 175
Query: 934 XVPTKKXFSPXXPRXXXPXEXXSRPXPQGPPXP 1032
P P P P +P QGPP P
Sbjct: 176 G-PNGGPGQPGQPGPHGPNGHPGKPGSQGPPGP 207
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.46
Identities = 32/115 (27%), Positives = 34/115 (29%), Gaps = 8/115 (6%)
Frame = +1
Query: 742 PRFPNXXTXXRPXIPPTPGXXKXLXXP----XXPPPPRPXFXAXPXXXPGXXXXXXXPXP 909
P P T P +PPTPG P PPPP P P PG P P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTP-GPPGMPGMPPPPPP 322
Query: 910 -RXNXXGXXXVPTKKXFSPXXPRXXXPXEXXSRPXP---QGPPXPXXXTPYVPXG 1062
R G +P P P P PP P P P G
Sbjct: 323 SRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSG 377
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.46
Identities = 32/115 (27%), Positives = 34/115 (29%), Gaps = 8/115 (6%)
Frame = +1
Query: 742 PRFPNXXTXXRPXIPPTPGXXKXLXXP----XXPPPPRPXFXAXPXXXPGXXXXXXXPXP 909
P P T P +PPTPG P PPPP P P PG P P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTP-GPPGMPGMPPPPPP 332
Query: 910 -RXNXXGXXXVPTKKXFSPXXPRXXXPXEXXSRPXP---QGPPXPXXXTPYVPXG 1062
R G +P P P P PP P P P G
Sbjct: 333 SRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSG 387
>U55364-13|AAM29677.1| 250|Caenorhabditis elegans Hypothetical
protein F21C10.3b protein.
Length = 250
Score = 31.9 bits (69), Expect = 0.80
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = -2
Query: 863 GXAXXXGLGGGGXXGXXRXXXXPGVGGXXGRXKVXXXGNRGPSXXKAGQETG 708
G G GGGG G R GVGG R ++ G RG S G +G
Sbjct: 25 GGRGGGGRGGGGRGGRGRSGARSGVGGSRSRPQM-RSGIRGSSSFSGGIRSG 75
>U55364-12|AAA97977.2| 260|Caenorhabditis elegans Hypothetical
protein F21C10.3a protein.
Length = 260
Score = 31.9 bits (69), Expect = 0.80
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = -2
Query: 863 GXAXXXGLGGGGXXGXXRXXXXPGVGGXXGRXKVXXXGNRGPSXXKAGQETG 708
G G GGGG G R GVGG R ++ G RG S G +G
Sbjct: 25 GGRGGGGRGGGGRGGRGRSGARSGVGGSRSRPQM-RSGIRGSSSFSGGIRSG 75
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical protein
C50F7.5 protein.
Length = 309
Score = 31.9 bits (69), Expect = 0.80
Identities = 22/92 (23%), Positives = 28/92 (30%)
Frame = +1
Query: 772 RPXIPPTPGXXKXLXXPXXPPPPRPXFXAXPXXXPGXXXXXXXPXPRXNXXGXXXVPTKK 951
+P PP+PG P P PG P P + P+ +
Sbjct: 144 QPSGPPSPGPVDPSEDPQPSVEPSEDPQPSGPPSPGPVDPSEDPQPSGSSSPGPVDPSDE 203
Query: 952 XFSPXXPRXXXPXEXXSRPXPQGPPXPXXXTP 1047
SP P P + P P PP P P
Sbjct: 204 P-SPSGPPSPGPVDPSEDPKPSEPPSPGPVDP 234
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.8
Identities = 24/88 (27%), Positives = 26/88 (29%), Gaps = 2/88 (2%)
Frame = +1
Query: 775 PXIPPTPGXXKXLXXPXXPPPPRPXFXAXPXXXPGXXXXXXXPXPRXNXXGXXXVPTKKX 954
P PP P L PPPP P + P G P G P +
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPP-PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 295
Query: 955 FSPXXPRXXXPXEXXSRPXPQ--GPPXP 1032
P P S P PQ G P P
Sbjct: 296 SPPPPPPPRGSPPTGSLPPPQAGGSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.8
Identities = 24/88 (27%), Positives = 26/88 (29%), Gaps = 2/88 (2%)
Frame = +1
Query: 775 PXIPPTPGXXKXLXXPXXPPPPRPXFXAXPXXXPGXXXXXXXPXPRXNXXGXXXVPTKKX 954
P PP P L PPPP P + P G P G P +
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPP-PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 316
Query: 955 FSPXXPRXXXPXEXXSRPXPQ--GPPXP 1032
P P S P PQ G P P
Sbjct: 317 SPPPPPPPRGSPPTGSLPPPQAGGSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.8
Identities = 24/88 (27%), Positives = 26/88 (29%), Gaps = 2/88 (2%)
Frame = +1
Query: 775 PXIPPTPGXXKXLXXPXXPPPPRPXFXAXPXXXPGXXXXXXXPXPRXNXXGXXXVPTKKX 954
P PP P L PPPP P + P G P G P +
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPP-PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 301
Query: 955 FSPXXPRXXXPXEXXSRPXPQ--GPPXP 1032
P P S P PQ G P P
Sbjct: 302 SPPPPPPPRGSPPTGSLPPPQAGGSPPP 329
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 29.9 bits (64), Expect = 3.2
Identities = 26/96 (27%), Positives = 28/96 (29%)
Frame = +1
Query: 739 GPRFPNXXTXXRPXIPPTPGXXKXLXXPXXPPPPRPXFXAXPXXXPGXXXXXXXPXPRXN 918
GP+ PN P P TPG P P P P PG
Sbjct: 198 GPKGPNG----EPGAPGTPGGNALPGPPGPPGPQGPPGADGLPGNPGAPGVPGQVIEVPG 253
Query: 919 XXGXXXVPTKKXFSPXXPRXXXPXEXXSRPXPQGPP 1026
G P P P S+P PQGPP
Sbjct: 254 TPGPAGPPGPP--GPIGPPGQPGAPGSSQPGPQGPP 287
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein
E02A10.2 protein.
Length = 385
Score = 29.1 bits (62), Expect = 5.6
Identities = 23/83 (27%), Positives = 23/83 (27%)
Frame = -2
Query: 1031 GXGGP*GXGRXXXSXGSXXRGXXGEXXFXVGTXXXPXXLXRGSGXXXXXXXPGXXXGXAX 852
G GG G G G G G G P G G G G
Sbjct: 78 GCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGG 137
Query: 851 XXGLGGGGXXGXXRXXXXPGVGG 783
G GGGG G G GG
Sbjct: 138 GGGCGGGGGGGCGGGGGGCGGGG 160
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +1
Query: 775 PXIPPTPGXXKXLXXPXXPPPPRPXFXAXPXXXPGXXXXXXXPXP 909
P PP PG + PPPP P P P P P
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +1
Query: 775 PXIPPTPGXXKXLXXPXXPPPPRPXFXAXPXXXPGXXXXXXXPXP 909
P PP PG + PPPP P P P P P
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +1
Query: 775 PXIPPTPGXXKXLXXPXXPPPPRPXFXAXPXXXPGXXXXXXXPXP 909
P PP PG + PPPP P P P P P
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 369
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.7 bits (61), Expect = 7.4
Identities = 25/96 (26%), Positives = 28/96 (29%), Gaps = 2/96 (2%)
Frame = +1
Query: 775 PXIPPTPGXXKXLXXPXXPPPPRPXFXAXPXXXPGXXXXXXXPXPRXNXXGXXXVPTKKX 954
P PP P + + P PP P P A P P P P
Sbjct: 50 PPPPPAPYPQQAVPAPAPPPAPYPQ-HAVPAPAPPLASYPQNAVP-VPAPPPAPYPQHAV 107
Query: 955 FSPXXPRXXXPXEXXSRPXP--QGPPXPXXXTPYVP 1056
+P P P P P Q PP P Y P
Sbjct: 108 PAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPP 143
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,236,162
Number of Sequences: 27780
Number of extensions: 123982
Number of successful extensions: 688
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2845728736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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