Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_G07
(906 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 45 1e-05
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 45 2e-05
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 45 2e-05
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 44 2e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 41 2e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 41 3e-04
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 39 8e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.002
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 38 0.003
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.003
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 37 0.003
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 37 0.005
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.006
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.008
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 36 0.010
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.010
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 36 0.010
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 35 0.014
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 35 0.014
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 33 0.056
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 33 0.074
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.074
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 32 0.13
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 32 0.13
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 31 0.23
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.39
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.52
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 29 0.69
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 29 0.91
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 29 1.2
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 2.1
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 2.8
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 4.8
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 8.5
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 8.5
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 8.5
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +1
Query: 220 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDG 399
+ +++VG + A++ ++ D F YG + + + GF FVE ED RDA D V G
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMN---GFGFVEVEDARDARDIVNDFQG 59
Query: 400 RTICGRRARVE 432
+ G R VE
Sbjct: 60 KEFMGSRIVVE 70
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +1
Query: 226 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAVRG 390
K+Y+ +L N + ++ + +G L + + +N GF F EF++P DAE A+ G
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 391 LDGRTICGRRARVEMS 438
LDG+ G + + +
Sbjct: 371 LDGKDTYGNKLHAQFA 386
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 44.8 bits (101), Expect = 2e-05
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +1
Query: 223 CKVYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAVR 387
C VYVG++ ++ ++ D F GP+++ + + P G+ F E+ DP A AVR
Sbjct: 5 CVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVR 64
Query: 388 GLDGRTICGRRARVE 432
L+ RR RV+
Sbjct: 65 NLNNYDAGTRRLRVD 79
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Frame = +1
Query: 229 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAVRGLD 396
V+VG+L + ++ L +AF +G + +V + R +AFVEF++P DA++A+ ++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 397 GRTICGRRARVEMSN 441
+C R RV +N
Sbjct: 68 YSILCDRCIRVSPAN 82
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 41.1 bits (92), Expect = 2e-04
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Frame = +1
Query: 187 QKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN---------PPGF 339
+++++ + D +V+VG L + K E+ F G +R V + P G
Sbjct: 32 EQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGI 91
Query: 340 AFVEFEDPRDAEDAVRGLDGRTICGRRARVE 432
AFV F + D + A+ L+G+T+ R V+
Sbjct: 92 AFVTFNNQEDVDKAIETLNGKTLDDREIVVQ 122
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 40.7 bits (91), Expect = 3e-04
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 229 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAVRGL 393
+++ L + + ++E F+ YGP+ + V RN G+AFV FE RD + A +
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 394 DGRTICGRRARVEM 435
G + GRR V++
Sbjct: 162 AGLMLNGRRIVVDV 175
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 39.1 bits (87), Expect = 8e-04
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 205 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWV----ARNPPGFAFVEFEDPRDA 372
MSR +YV + EL F +GPL + R FAFVE+ED RDA
Sbjct: 1 MSRRSLRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDA 60
Query: 373 EDAVRGLDGRTI 408
EDA + GR +
Sbjct: 61 EDAYYEVHGRRL 72
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.9 bits (84), Expect = 0.002
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 229 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAVRGL 393
+YVG+L + ++ L + F+ GP+ ++ V R+ G+A+V F + D E A+ L
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 394 DGRTICGRRARVEMS 438
+ I GR R+ S
Sbjct: 142 NYTLIKGRPCRIMWS 156
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 37.5 bits (83), Expect = 0.003
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +1
Query: 223 CKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAVR 387
C V+VG L N L F YG + V + G+ +V+FE P A+ AV
Sbjct: 263 CTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVA 322
Query: 388 GLDGRTICGRRARVEMSN 441
+ I GR +++SN
Sbjct: 323 ANGTKEIDGRMVNLDLSN 340
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.5 bits (83), Expect = 0.003
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 226 KVYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAVRG 390
++++ +L + ++ +L+ F +G L V + NP GFA+++F D DA A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 391 LDGRTICGRRARV 429
LD + GR V
Sbjct: 384 LDAKPFQGRLLHV 396
Score = 30.7 bits (66), Expect = 0.30
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 334 GFAFVEFEDPRDAEDAVRGLDGRTICGRRARVEMSN 441
GF FVEF+D A A+ ++G + G + +++S+
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSH 701
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 229 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAVRGL 393
V+VG++ + S+ ++ + F+ GP++ + +P G+ F EF D AVR L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 394 DGRTICGRRARVE 432
+ + R+ RVE
Sbjct: 69 NNSELGPRKIRVE 81
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 36.7 bits (81), Expect = 0.005
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 226 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAVRGL 393
+++VG+LGN+ + L AFS Y L V R+ GF FV F+D A R
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 394 DGRTICGRRARV 429
+G+ I R ++
Sbjct: 91 NGKYIGSRPVKL 102
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.3 bits (80), Expect = 0.006
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +1
Query: 229 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAVRGL 393
++V +L + +L + FS GP+++ V NP G+ FV F DA+ A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 394 DGRTICGRRARVEMS 438
+ + GR R++ +
Sbjct: 67 KNKKLHGRILRLDFA 81
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.9 bits (79), Expect = 0.008
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +1
Query: 220 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAVR 387
DC +YVG+L S L D F+ G + +A P G F V+FE+ DA ++
Sbjct: 280 DC-IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIE 338
Query: 388 GLDGRTICGR 417
L+G GR
Sbjct: 339 KLNGYRYGGR 348
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 35.5 bits (78), Expect = 0.010
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +1
Query: 229 VYVGDLGNNASKPEL----EDAFSYYGPLRNVWVARN--PPGFAFVEFEDPRDAEDAVRG 390
++V L ++ S+ EL +D F +GPL +V V ++ ++FV+F++ DA A+
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSE 140
Query: 391 LDGRTICGRRARVE 432
+ GR R+E
Sbjct: 141 AQNTILDGRHIRIE 154
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.5 bits (78), Expect = 0.010
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Frame = +1
Query: 220 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWV----------ARNPPGFAFVEFEDPRD 369
+ +YVG+L + +L + F +G + +++P FAF+ FE+
Sbjct: 19 EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCS 78
Query: 370 AEDAVRGLDGRTICGRRARVEMSN 441
A++A+ L+G + G +VE ++
Sbjct: 79 ADNAIASLNGSSFQGNTLKVEYTH 102
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.5 bits (78), Expect = 0.010
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +1
Query: 229 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGL 393
V++G+L ++ + E+E+AF +G + ++ + + AFV F + RDA VR L
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-SKKNIAFVHFLNIRDAIKVVRTL 354
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 35.1 bits (77), Expect = 0.014
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +1
Query: 229 VYVGDLGNNASKPELEDAFSYYGPLRNVWVA-----RNPPGFAFVEFEDPRDAEDAVRGL 393
VYVG+L ++ ++ FS G +R + + + P GF FVE+ + +DA D+++ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 394 DGRTICGRRARVEMSN 441
++ R R ++ +
Sbjct: 94 SRTSLDERIIRADLDH 109
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 35.1 bits (77), Expect = 0.014
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 334 GFAFVEFEDPRDAEDAVRGLDGRTICGRRARVE 432
G AF F P +A+ V+ L+G I GRR RVE
Sbjct: 274 GLAFANFHSPEEAKTVVQVLNGYEITGRRLRVE 306
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 33.1 bits (72), Expect = 0.056
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +1
Query: 229 VYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAVRGL 393
VYVG++ + + EL+ F+ G + V + +P GFA++EF +P +A+ L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL-L 115
Query: 394 DGRTICGRRARV 429
+G + R +V
Sbjct: 116 NGSMLHERPLKV 127
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 32.7 bits (71), Expect = 0.074
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 334 GFAFVEFEDPRDAEDAVRGLDGRTICGRRARVE 432
G AF F P +A+ V+ L+G I GRR RVE
Sbjct: 244 GLAFANFYRPEEAQVVVQTLNGYEINGRRLRVE 276
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 32.7 bits (71), Expect = 0.074
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = +1
Query: 193 ASSTMSRYGDCK-VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEF 354
+SS Y D +Y+G+L + ++ ++ FS +G ++ + R+ GFAF+++
Sbjct: 20 SSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
Query: 355 EDPRDAEDAVRGLDGRTICGRRARVE 432
ED R AV + + R RV+
Sbjct: 80 EDQRSTVLAVDNMTNVKLLDRLVRVD 105
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 274 EDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGRTICGRRARVEM 435
E+ YG + ++ V N G FV+FE+ AE A+ GL R GR + +
Sbjct: 535 EECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASI 588
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 364 VDLRIQQMRSLEDFLQPTHSSV-DHNMKRHLQVQVY*HYSPNLQHKLCSHHS 212
+D +++R+ D LQ H ++ DHN Q+Q+Y Y N + ++ HS
Sbjct: 595 LDALYERIRAERDALQDVHRAICDHNEYLQTQLQIYGSYLNNARSQIKPSHS 646
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.1 bits (67), Expect = 0.23
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +1
Query: 211 RYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVAR-----NPPGFAFVEFEDPRDAE 375
R D +Y+G+L + L + GP+ N+ + R + GF F EF +D E
Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66
Query: 376 DAVRGLDGRTICGRRARVEMSN 441
A + L+ + G+ RV ++
Sbjct: 67 YACQILNQVKLFGKPIRVNRAS 88
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 30.3 bits (65), Expect = 0.39
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +1
Query: 235 VGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGRTICG 414
V ++ ++ L F YG L V + G A VEF D DA A L+G I G
Sbjct: 878 VTNVDGTVNEARLRSLFESYGKLYRVVLHPEHEG-AVVEFLDIHDAGKASLALEGHEIGG 936
Query: 415 RRARVEMSN 441
R + N
Sbjct: 937 RLLHITTVN 945
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 29.9 bits (64), Expect = 0.52
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +1
Query: 229 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGRTI 408
+YV +L S + FS YG ++++W+ +P A V +E A A L R +
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYESLSSAIVARDALHNRPV 60
Query: 409 CGRRARVEM 435
V++
Sbjct: 61 FENHGPVQV 69
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 0.69
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = +1
Query: 178 LTIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFA 342
L + S M + V+VG+L A + L F G + V + R+P GFA
Sbjct: 255 LRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFA 314
Query: 343 FVEFEDPRDAEDAVRGLDGRTICGRRARV 429
+++F+D + A+ + + GR R+
Sbjct: 315 YIQFKDTMGVDKALLLNEKKMPEGRTLRI 343
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 29.1 bits (62), Expect = 0.91
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 514 CYDCGDRGHYXRDC 555
CY+CG+ GH R+C
Sbjct: 19 CYNCGENGHQAREC 32
Score = 27.9 bits (59), Expect = 2.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 514 CYDCGDRGHYXRDC 555
CY CG GH RDC
Sbjct: 60 CYACGTAGHLVRDC 73
Score = 27.9 bits (59), Expect = 2.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 514 CYDCGDRGHYXRDC 555
CY CG GH RDC
Sbjct: 118 CYACGSYGHQARDC 131
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 514 CYDCGDRGHYXRDC 555
CY CG GH RDC
Sbjct: 85 CYKCGRVGHIARDC 98
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 229 VYVGDLGNNASKPELEDAFSYYGPLRNVW--VARNPPGFAFVEFEDPRDAEDAVRGLDGR 402
+YVG+L N + +L AFS R + + N P FVEFE+ A A+ + G
Sbjct: 604 IYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSP-MCFVEFEEVCHAAKAMEKMQGA 662
Query: 403 TI 408
+
Sbjct: 663 AL 664
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 229 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGRTI 408
++VG+L + S + FS YG + ++ + + AF+ F+ A+ + L+G+ I
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS-AFLNFDSVETAKHVLEELNGKRI 647
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +1
Query: 229 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFE 357
+YVG L + + ++ FS +GP+ + ++RN +AF+EFE
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFE 154
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 4.8
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 247 GNNASKPELEDAFSYYGPLRNVWVARNPPGFAFV-EFEDPRDAEDAVRGLDGRTI 408
G+ S +L+ +GPL + R+ + EF D RDA A+ LDGR I
Sbjct: 300 GSVLSILQLQSILQTFGPLLIMKPLRSQNVSQIICEFYDTRDASFALDELDGRII 354
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 8.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1
Query: 514 CYDCGDRGHYXRDC 555
CY CG +GH+ + C
Sbjct: 185 CYRCGQKGHWIQAC 198
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +1
Query: 256 ASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAV 384
A++ ++ED F+ +GP++N+ + + G+A +E+ A+ AV
Sbjct: 21 ATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 244 NLQHKLCSHHSVTSWTMLFGWSI-NILMRFITKPL 143
+L + + + ++V SW MLF W I IL+ K +
Sbjct: 247 HLTNPIWNQYTVGSWFMLFAWCIYGILLSIFFKEI 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,476
Number of Sequences: 5004
Number of extensions: 45715
Number of successful extensions: 145
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -