Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_G06
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    29   1.2  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.8  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   8.8  

>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = -2

Query: 257 PIVLCCGDALLPGYRESAPRYSLTFQQNAPQYSITVFATHHTLNRDSNKRIILIFSQYTH 78
           PI+  C D   P  R   P   + + +  PQ S+       T+ R+ N   I + S+   
Sbjct: 526 PIICICNDLYTPALRPLRPYAQIIYFRPPPQASLV--GRLRTICRNEN---IAVDSRSLT 580

Query: 77  RKTKIFNS*LKILRNSL 27
             T I+NS ++   NSL
Sbjct: 581 LLTDIYNSDIRSCINSL 597


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 249 FMLRGRVTAWIQGVCASIFANFSTKCPAIF 160
           F L G +T+ IQG    IFA   +KC  +F
Sbjct: 780 FFLLGLLTSLIQGASVPIFAYVISKCLNLF 809


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
 Frame = -2

Query: 314  APMSHARPHPQADNTRHHGPIVLCCGDALLPGYRESAPRYSLTFQQNAPQY--SITVFAT 141
            AP+ + +     +N R+     L   D LL    ESAPRY      +   Y  ++ +++ 
Sbjct: 756  APLRYVKIWANTENARYSTSNALEILDMLLREKIESAPRYDTLIYHSWCYYVAALVLWSI 815

Query: 140  HHTLNRDSNK--RIILIFSQYTHRKTKI 63
               L+ ++ K   +  + SQ +   TK+
Sbjct: 816  GFALDEENKKTEEVTNLHSQMSRYVTKV 843


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,504
Number of Sequences: 5004
Number of extensions: 37623
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)