Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_G03
         (957 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.10 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 502 PXKXXPPPXGGGGXFXXXXPPPPPPXXXKKKK 407
           P    PPP   G       PPPPPP   KK+K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 502 PXKXXPPPXGGGGXFXXXXPPPPPPXXXKKKKK 404
           P    PPP    G      PPPPPP    KK+K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 484 PPXGGGGXFXXXXPPPPPP 428
           PP G G       PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 235 PLXGGXRPPXKKKXXXGGGPPP 300
           P+ GG  PP       G GPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPP 777



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 487 PPPXGGGGXFXXXXPPPPPP 428
           PPP  G        PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 487 PPPXGGGGXFXXXXPPPPPP 428
           PPP    G      PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 429 GGGGGGFXXKKXPPPPXGGG 488
           GGG GGF      PPP  GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGG 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,402,109
Number of Sequences: 5004
Number of extensions: 13013
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)