Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_G02
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr...    39   0.001
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    36   0.011
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    30   0.39 
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    29   0.69 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    28   1.6  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    28   1.6  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   2.8  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    27   3.7  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   3.7  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   3.7  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    26   6.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   8.5  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    26   8.5  

>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 112

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 20/100 (20%), Positives = 52/100 (52%)
 Frame = +2

Query: 188 LQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEH 367
           +Q   +++++ +  I  Q+A   R    + L ++E++ +      Y S+ +MF++SDL  
Sbjct: 8   IQEKAVDSQQQLRTIMVQIAAKERALKISELAKKELEDVGEDKAVYTSLGKMFMKSDLAS 67

Query: 368 IKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDL 487
           ++ +L  +  +L   I+ L  ++     T + +E +++ +
Sbjct: 68  VRTHLDAEMASLREDIEALQKKQTYHETTASNAEQHLQKI 107


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 22/101 (21%), Positives = 50/101 (49%)
 Frame = +2

Query: 257 RMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRK 436
           R+Q   +L  +EID+L    K+Y+    +  + + +  K    ++   L+  +D+   + 
Sbjct: 382 RLQRQKSLATQEIDLLRENLKSYDDEEAILSEKNTDMKKL---ERIEGLVKLVDEYKLKL 438

Query: 437 VCLNHTLNESESNIRDLIQQKRMKNENQPAAESNPIPSKNR 559
             +  +L+  E++    +Q++R KNE++ A     +  KN+
Sbjct: 439 ESMPVSLDVDETSDEVSLQKRRRKNEHKDAGYVTELYRKNQ 479


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = +2

Query: 311 GTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLI 490
           GTK YE +AR + Q  LE  +Q+ +     L   + D +    C    + +  S+ +D  
Sbjct: 146 GTKVYEELARKYPQHSLESWRQHYKYMKKRL-PPVSDSDESNYC-QRIIVKPYSSQKDYT 203

Query: 491 QQKRMKNENQPAAESNPI-PSKNR 559
           Q    +  + P ++S  +  S+N+
Sbjct: 204 QSTHEQTLSSPISKSASVSKSENK 227


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +2

Query: 269 HTNLTQREIDVLPPGTKTY-----ESMARMFVQSDLEHIKQN 379
           H  LT   + V PP T+TY     E+   MF+  DLE++ QN
Sbjct: 202 HIALTTSGMSVHPPVTETYTYPVTEAFQGMFLGLDLEYVPQN 243


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/71 (22%), Positives = 39/71 (54%)
 Frame = +2

Query: 89   IVIGAQDSDFIFLTTIIKMAKTVDLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQM 268
            I + +  SD++ L +I+++ +   ++ +Q F+D Q L + + K +  I    A + ++ +
Sbjct: 1174 IYLNSSTSDYLSLNSILRVLQGKMVKWEQRFLDYQRLYLPSYKELSKI--AAAQIKKVFL 1231

Query: 269  HTNLTQREIDV 301
               L+Q  +D+
Sbjct: 1232 ERPLSQTPLDL 1242


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = +2

Query: 200 MIETKKTIENIDHQLAVLGR-MQMHTNLTQREIDVLPPGTKTYESMARMFVQ--SDLEHI 370
           +++  KTIEN+    +   R + +  +LT+   +VL P  K YE ++++  +  SDL  +
Sbjct: 686 LLKHSKTIENVSSNFSKKNRNVVVSESLTKSMEEVLTP-EKFYERLSKLLEEENSDLGEL 744

Query: 371 KQNL 382
           K +L
Sbjct: 745 KNHL 748


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 524 LADFHFSSFFAESNL*CWTRFHLKCGLNIPCDY 426
           LAD H S     S+L  W R HLK   ++P  Y
Sbjct: 732 LADLHVSKNSPISSLSEWIREHLKWSSDVPITY 764


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 5/161 (3%)
 Frame = +2

Query: 59   RKATRLFVFKIVIGAQDSDFIFLT----TIIKMAKTVDLELKQAFVDLQVLMIETKKTIE 226
            RK+    +F + I  +  DF+ L     T  ++ K V   L++    LQ + +E+   + 
Sbjct: 574  RKSALHEIF-VKINLKIDDFLGLAEYDWTTTQVRKDVSGYLQEMVTYLQTMYLESLAGLP 632

Query: 227  NIDHQLAVLGRMQMHTNLTQREIDVLP-PGTKTYESMARMFVQSDLEHIKQNLRQKTNTL 403
              D     L  +    +L    +D+L  P  +   + A    + D+E+++    Q  +  
Sbjct: 633  KHDKSYVYLETLD---HLCTAMVDLLSDPSIRKVTTAAAEGFKLDVEYLESFAAQVPDQS 689

Query: 404  ISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQPA 526
            I   D     + C N  L ++     D  +  R  N  QPA
Sbjct: 690  IVNADSFIELRQCANLLLGDNMEEYLDTDKFMRDFNRLQPA 730


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +2

Query: 290 EIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESE 469
           E  +LP    +YE++  +F + D +H+ ++       LI +  D +     L H +N+  
Sbjct: 364 ESQILPCVLHSYETLTNVFHRDDSKHLYESAVDHGRRLIMKFSD-SELHTFLFHCVNKIV 422

Query: 470 SN 475
           +N
Sbjct: 423 AN 424


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
 Frame = +2

Query: 164  ELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTN-----------LTQREIDVLPP 310
            EL +++  LQ  +   K  ++N+  QL++       +N           L     D L  
Sbjct: 741  ELDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQSNHIVDNLKSENLLLTSVKDKLKA 800

Query: 311  GTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRD 484
                 ES     +Q D  H+K  +        + +D +N+R + L++ L  + S + +
Sbjct: 801  DLSNLESKLSS-LQQDNFHMKAQIESSNQEYTATVDSMNSRILELSNDLRVANSKLSE 857


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +2

Query: 317 KTYESMARMFVQSDL--EHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLI 490
           KTYE + + +    L  + +K  L    NTL++ + +   +   L+  L  +  + +DL 
Sbjct: 294 KTYEEVEKAYKDLTLSPQDLKLGLESSVNTLLAGVQEQLKQYPDLDSILKAAYPDPKDLK 353

Query: 491 QQKRMKNENQPAAE 532
           +  + K +++  A+
Sbjct: 354 KAMKQKKQDKKNAK 367


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 458  NESESNIRDLIQQKRMKNENQPAAESNPIPSKNR*LE 568
            N++E    D I +KR+  +N  +AES  I  K R LE
Sbjct: 1088 NKNEREESDTILKKRLAKKNNVSAESIIIEPKIRFLE 1124


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 449 HTLNESESNIRDLIQQKRMKNENQPAAESNPIPS 550
           HT     S I+D+I  +R KN+ + A  S+  PS
Sbjct: 243 HTSAGMSSLIQDMINSQRTKNKVEEAIVSSSAPS 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,384
Number of Sequences: 5004
Number of extensions: 56740
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)