Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_G01
         (923 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621           29   6.9  
06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665...    28   9.1  

>05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621
          Length = 283

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 747 PPPPGXXXNRSPXPXDRXQXVSERGSGRA 661
           PPPP       P P D  + VSE G+G A
Sbjct: 51  PPPPDDGGEFPPPPDDGGEGVSEGGAGVA 79


>06_03_0437 - 20765682-20765951,20766040-20766294,20766374-20766545,
            20766964-20767097,20767205-20767288,20767369-20767659,
            20767867-20768214,20768321-20768496,20768579-20768695,
            20768780-20768936,20769110-20769225,20769323-20769483,
            20769567-20769883,20769969-20770250,20770347-20770648,
            20771977-20772067,20773203-20773256,20773723-20773812
          Length = 1138

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 46   FCLPEGLCKVINIFLYFIYYSLLPAASPACSWDSVSFFWK*DVFAESYLS 195
            + + + + ++  +F+   YY+L+  A  +  W +  FFW    F  SY S
Sbjct: 960  YAIAQVVMEIPYVFVQTAYYTLIVYAMMSFQWTAAKFFW---FFFVSYFS 1006


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,613,030
Number of Sequences: 37544
Number of extensions: 229999
Number of successful extensions: 386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)