Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F24
         (967 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.003
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    41   0.041
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    40   0.13 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    36   1.5  
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    36   1.5  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   6.3  

>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.003
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 93  DPDMIRYIDEFGQTTTRMQ 149
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 41.1 bits (92), Expect = 0.041
 Identities = 19/25 (76%), Positives = 19/25 (76%)
 Frame = +3

Query: 342 ALPLPRSLTRCARSFGCGRXVSAHS 416
           ALPL RS TRC RS GCG  VSAHS
Sbjct: 283 ALPLLRSRTRCVRSVGCGGAVSAHS 307


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 39.5 bits (88), Expect = 0.13
 Identities = 19/31 (61%), Positives = 20/31 (64%)
 Frame = +3

Query: 303 RPTRGXXRFAYWGALPLPRSLTRCARSFGCG 395
           R  R   R    G +PLPRSLTR ARSFGCG
Sbjct: 22  RQHRRVSRICDTGDIPLPRSLTRYARSFGCG 52


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 288 SALMNRPTRGXXRFAYW 338
           +ALMNRPTRG  RFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -2

Query: 339 PNTQTAXPRALADSLMQ 289
           PNTQTA PRALADSLMQ
Sbjct: 332 PNTQTASPRALADSLMQ 348


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 6.3
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -3

Query: 251 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 87
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,414,306
Number of Sequences: 1657284
Number of extensions: 10046175
Number of successful extensions: 17090
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17078
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 89815291940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)