Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F23
         (964 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   1.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.5  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 669 PFGXPLGLXNXFPGXYP 619
           P+G P+G    FP  YP
Sbjct: 381 PYGYPIGSGGSFPSLYP 397


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -2

Query: 960 PXXGPXPGGVXGXXPPXPP 904
           P  GP PGG  G  P   P
Sbjct: 42  PSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 820 PPEXPPPXXPLXSPP 864
           P + PPP  P  +PP
Sbjct: 42  PSQGPPPGGPPGAPP 56


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +2

Query: 791  GXLKXXXVXSPRKXPPPXXPXVPPPXP 871
            G +    V S R  P    P  PPP P
Sbjct: 1838 GSVGRRSVGSARNIPVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,293
Number of Sequences: 438
Number of extensions: 5993
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)