Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F19
         (901 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   5.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   7.5  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   9.9  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +2

Query: 266 PFIIGYLIYEGVEREHHRLSRKNPADFEND 355
           P  +G   Y   +  HH L  + P D   D
Sbjct: 40  PLSLGMSPYASSQHHHHHLQARPPQDSPYD 69


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 67  YVRFYCKS*KLEVHHYGQT 123
           Y   YC S K+ +  YG T
Sbjct: 294 YATKYCHSLKIHLRRYGHT 312


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 571 DXPHLKCSEKNGFIGXIGK 627
           D  H  C EKNG +  + K
Sbjct: 355 DDMHEFCGEKNGLLKAVNK 373


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,499
Number of Sequences: 336
Number of extensions: 2698
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)