Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F19
         (901 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC090048-1|AAH90048.1|   82|Homo sapiens ubiquinol-cytochrome c ...    94   7e-19
BC001390-1|AAH01390.1|   82|Homo sapiens ubiquinol-cytochrome c ...    94   7e-19
D50369-1|BAA23321.1|   93|Homo sapiens low molecular mass ubiqui...    79   3e-14

>BC090048-1|AAH90048.1|   82|Homo sapiens ubiquinol-cytochrome c
           reductase, complex III subunit VII, 9.5kDa protein.
          Length = 82

 Score = 93.9 bits (223), Expect = 7e-19
 Identities = 41/82 (50%), Positives = 55/82 (67%)
 Frame = +2

Query: 113 MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIY 292
           MG+ FG L ++R +++Y +S  EQRAY    + GIPN+ RR RES F+VVP F++ YLIY
Sbjct: 1   MGREFGNLTRMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYLIY 60

Query: 293 EGVEREHHRLSRKNPADFENDQ 358
                E  R  RKNPA +END+
Sbjct: 61  TWGTEEFERSKRKNPAAYENDK 82


>BC001390-1|AAH01390.1|   82|Homo sapiens ubiquinol-cytochrome c
           reductase, complex III subunit VII, 9.5kDa protein.
          Length = 82

 Score = 93.9 bits (223), Expect = 7e-19
 Identities = 41/82 (50%), Positives = 55/82 (67%)
 Frame = +2

Query: 113 MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIY 292
           MG+ FG L ++R +++Y +S  EQRAY    + GIPN+ RR RES F+VVP F++ YLIY
Sbjct: 1   MGREFGNLTRMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYLIY 60

Query: 293 EGVEREHHRLSRKNPADFENDQ 358
                E  R  RKNPA +END+
Sbjct: 61  TWGTEEFERSKRKNPAAYENDK 82


>D50369-1|BAA23321.1|   93|Homo sapiens low molecular mass
           ubiquinone-binding protein protein.
          Length = 93

 Score = 78.6 bits (185), Expect = 3e-14
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
 Frame = +2

Query: 113 MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIY 292
           MG+ FG L ++R +++Y +S  EQRAY    + GIPN+ RR RES F+VVP F++ YLIY
Sbjct: 1   MGREFGNLTRMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYLIY 60

Query: 293 EGVEREHHRLSRK--NPADFENDQ 358
                E  R  R+   P    N+Q
Sbjct: 61  TWGTEEFERSKRRIQLPMKMTNEQ 84


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,880,306
Number of Sequences: 237096
Number of extensions: 1845753
Number of successful extensions: 3193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3121
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)