Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F18
         (939 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 459 PPPPPPP 439
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 572 PPPPPPXR 549
           PPPPPP R
Sbjct: 731 PPPPPPPR 738


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 440 GGGGGGGSXXXXXGPPPGG 496
           GGGGG GS       PPGG
Sbjct: 524 GGGGGSGSGN---NQPPGG 539


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 749 GGPXFLXGXPPGGGXPXXKPPXP 681
           G P    G PP GG P    P P
Sbjct: 59  GIPPHHYGGPPSGGQPPQGMPYP 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.160    0.564 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,590
Number of Sequences: 336
Number of extensions: 4434
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26375415
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)