Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F18
         (939 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.57 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.99 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.0  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   7.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 459  PPPPPPPXXGK 427
            PPPPPPP  G+
Sbjct: 1356 PPPPPPPSSGQ 1366



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 459  PPPPPPP 439
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.99
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 596  LPPXGGXXPPPPPP 555
            +P  G   PPPPPP
Sbjct: 1851 IPVSGSPEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 590  PXGGXXPPPPPPXR 549
            P  G   PPPPP R
Sbjct: 1852 PVSGSPEPPPPPPR 1865


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 459 PPPPPPPXXG 430
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = -2

Query: 779 PXXAPXPXXXGGPXFLXGXPPGGGXPXXKPPXPXP 675
           P  +P     G P      PP GG P   PP   P
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPP-GAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 10/19 (52%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
 Frame = +3

Query: 489 PGXGGXGXGPPXAPP-XNP 542
           P  G    GPP APP  NP
Sbjct: 42  PSQGPPPGGPPGAPPSQNP 60


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
 Frame = +1

Query: 487 PRGXGGXX*GPPPPPPXTXXXRX---GGGGGGXXPP 585
           PR   G    PP PPP          G  G G  PP
Sbjct: 42  PRSNRGPVLFPPGPPPNNEDSSGVIVGASGYGFVPP 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.160    0.564 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,455
Number of Sequences: 438
Number of extensions: 11036
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)