Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_F17
(958 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0252 + 1868670-1869200,1870167-1871120 34 0.15
11_01_0252 + 1934505-1935032,1936001-1936957 34 0.15
08_02_1308 - 26024491-26025405 33 0.34
04_03_0991 - 21500143-21500799,21500834-21501172 33 0.44
04_03_0990 - 21481459-21481933,21482140-21482771 32 0.59
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 31 1.8
08_02_1301 - 25977012-25978037 30 2.4
10_08_0052 - 14491990-14493108 29 5.5
10_08_0051 + 14489255-14490403 29 5.5
01_07_0176 - 41733845-41734834,41736058-41736588 29 5.5
11_01_0366 + 2793732-2793838,2793944-2794979 29 7.2
10_08_0053 - 14496494-14497240,14497418-14497501,14497676-14498152 28 9.6
>12_01_0252 + 1868670-1869200,1870167-1871120
Length = 494
Score = 34.3 bits (75), Expect = 0.15
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 257 MSAGFHGLLSRGDLV-DVXXAAEGRLLQAHKLVLSVCXPYFREM-XXMNPPHHP 412
+S + LL G DV + EGRL+ AH+ VL+ +FR++ ++P H P
Sbjct: 10 LSLDYLNLLINGQAFSDVAFSVEGRLVHAHRCVLAARSLFFRKLFCGLDPNHQP 63
>11_01_0252 + 1934505-1935032,1936001-1936957
Length = 494
Score = 34.3 bits (75), Expect = 0.15
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 257 MSAGFHGLLSRGDLV-DVXXAAEGRLLQAHKLVLSVCXPYFREM-XXMNPPHHP 412
+S + LL G DV + EGRL+ AH+ VL+ +FR++ ++P H P
Sbjct: 10 LSLDYLSLLINGQAFSDVAFSVEGRLVHAHRCVLAARSLFFRKLFCGLDPNHQP 63
>08_02_1308 - 26024491-26025405
Length = 304
Score = 33.1 bits (72), Expect = 0.34
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 257 MSAGFHGLLSRGDLVDVXXAAEGRLLQAHKLVLSVCXPYFR 379
+ A GLL RG+ DV +G AH+ VL+ P FR
Sbjct: 114 IGAHLGGLLDRGEGTDVSFLVDGETFPAHRAVLAARSPVFR 154
>04_03_0991 - 21500143-21500799,21500834-21501172
Length = 331
Score = 32.7 bits (71), Expect = 0.44
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 275 GLLSRGDLVDVXXAAEGRLLQAHKLVLSVCXPYFR 379
GLL+ G+ DV G+ AH+LVL+ P FR
Sbjct: 168 GLLATGEGADVTFEVSGKTFAAHRLVLAARSPVFR 202
>04_03_0990 - 21481459-21481933,21482140-21482771
Length = 368
Score = 32.3 bits (70), Expect = 0.59
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 275 GLLSRGDLVDVXXAAEGRLLQAHKLVLSVCXPYFR 379
GLL+ G+ DV EG+ AH+ VL+ P FR
Sbjct: 188 GLLATGEGADVTFEVEGKTFAAHRWVLAARSPVFR 222
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 257 MSAGFHGLLSRGDLVDVXXAAEGRLLQAHKLVLSVCXPYFR 379
MS LL+ G D+ +G + AHK+VL+ P FR
Sbjct: 297 MSQHIGQLLTDGKRTDITFEVDGEVFPAHKVVLAARSPVFR 337
>08_02_1301 - 25977012-25978037
Length = 341
Score = 30.3 bits (65), Expect = 2.4
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 275 GLLSRGDLVDVXXAAEGRLLQAHKLVLSVCXPYFRE--MXXMNPPHHPIVFXXDVXHSAL 448
G++ R D DV + G AH+ VL+ P F+ + M P V D+ +
Sbjct: 163 GIVDRADCSDVSFSVGGETFHAHRAVLAARSPVFKAELLGSMAEAAMPCVTLHDIDPATF 222
Query: 449 RDLL 460
+ LL
Sbjct: 223 KALL 226
>10_08_0052 - 14491990-14493108
Length = 372
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 275 GLLSRGDLVDVXXAAEGRLLQAHKLVLSVCXPYFR 379
GLL GD DV G ++AH+ +L+ P F+
Sbjct: 188 GLLESGDGADVTFRVAGEDVRAHRYILAARSPVFK 222
>10_08_0051 + 14489255-14490403
Length = 382
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 275 GLLSRGDLVDVXXAAEGRLLQAHKLVLSVCXPYFR 379
GLL GD DV G ++AH+ +L+ P F+
Sbjct: 192 GLLESGDGADVTFHVAGEEVRAHRYILAARSPVFK 226
>01_07_0176 - 41733845-41734834,41736058-41736588
Length = 506
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 257 MSAGFHGLLSRGDLV-DVXXAAEGRLLQAHKLVLSVCXPYFRE 382
+S + LL G DV + EGRL+ AH+ +L+ +FR+
Sbjct: 8 LSMDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRK 50
>11_01_0366 + 2793732-2793838,2793944-2794979
Length = 380
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 266 GFHGLLSRGDLVDVXXAAEGRLLQAHKLVLS 358
G + + GD+ DV A +G L Q H +V+S
Sbjct: 262 GLRNVFAIGDITDVPEAKQGYLAQRHAMVVS 292
>10_08_0053 - 14496494-14497240,14497418-14497501,14497676-14498152
Length = 435
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 275 GLLSRGDLVDVXXAAEGRLLQAHKLVLSVCXPYFR 379
GLL GD DV G + AH+ +L+ P F+
Sbjct: 252 GLLESGDGADVTFHVAGEEVPAHRYILAARSPVFK 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,608,208
Number of Sequences: 37544
Number of extensions: 315071
Number of successful extensions: 645
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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