Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F17
         (958 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      86   5e-19
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          79   4e-17
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      33   0.004
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   9.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 85.8 bits (203), Expect = 5e-19
 Identities = 43/113 (38%), Positives = 61/113 (53%)
 Frame = +2

Query: 206 MASDEQFSLCWNNFHAXMSAGFHGLLSRGDLVDVXXAAEGRLLQAHKLVLSVCXPYFREM 385
           M   + F L WNN+ + +++ F  L    D VDV  A +GR L+AH++VLS C PYFRE+
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFREL 60

Query: 386 XXMNPPHHPIVFXXDVXHSALRDLLXXYVSRVKFXVKQEEXPSXISTAEQLXV 544
               P  HP++   DV  S L  L+  ++   +  V Q    S + TAE L V
Sbjct: 61  LKSTPCKHPVIVLQDVAFSDLHALV-EFIYHGEVNVHQRSLSSFLKTAEVLRV 112


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 79.4 bits (187), Expect = 4e-17
 Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
 Frame = +2

Query: 218 EQFSLCWNNFHAXMSAGFHGLLSRGDLVDVXXAAEGRLLQAHKLVLSVCXPYFREMXXMN 397
           + + L WNN+ + M++ FH LL     VDV  A     L+AHK+VLS C  YF+++   N
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSN 68

Query: 398 PPHHP-IVFXXDVXHSALRDLLXXYVSRVKFXVKQEEXPSXISTAEQLXVK 547
           P  HP I+   DV  + L+  +  +V R +  V Q E  S + TA+QL +K
Sbjct: 69  PCKHPTIIMPQDVCFNDLK-FIIEFVYRGEIDVSQAELQSLLKTADQLKIK 118


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 33.1 bits (72), Expect = 0.004
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 206 MASDEQFSLCWNNFHAXMSAGFHGLLSRGDLVDVXXAAE 322
           M   + F L WNN+ + +++ F  L    D VDV  A E
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 183 FHVESSLSWRRTNNFHY 233
           +   +S SWR TNN  Y
Sbjct: 211 YDFRNSRSWRITNNLFY 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,791
Number of Sequences: 438
Number of extensions: 3312
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)