Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F16
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.6  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   6.4  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = -1

Query: 729 GGFFXXFXGGGGLCVKXPXXGPFXXFGXFGG 637
           GG F  F GG G     P  G F  FG FGG
Sbjct: 187 GGGFGGFGGGSG--GPPPGPGGFGGFGGFGG 215


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 822 GGXXXGGXRGGXRGGXXGFF 763
           GG   GG RGG RGG  G F
Sbjct: 171 GGGSRGGSRGGFRGGSRGGF 190



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 871 GXLSPKGEKXGXFFVXGXXXXRGXKGGXXGGEXG 770
           G   PKG + G     G    RG +GG  GG  G
Sbjct: 123 GPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGG 156



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -1

Query: 819 GXXXGGXRGGXRGGXXGFFXXLGXXPPXKWGGFFXXFXGGG 697
           G    G RGG RGG  G     G      +GG      GGG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 819 GXXXGGXRGGXRGGXXGFF 763
           G   GG RGG RGG  G F
Sbjct: 176 GGSRGGFRGGSRGGFRGRF 194


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +1

Query: 700  PPXKXXKKPPPFXGGXXPQXXKKPXXPPPXTPPXP 804
            PP +     PP      P        PPP  PP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +1

Query: 697  PPPXKXXKKPPPFXGGXXPQXXKKPXXPPPXTPPXP 804
            PPP       PP   G      ++P  P P TP  P
Sbjct: 927  PPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAP 962


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,635,185
Number of Sequences: 5004
Number of extensions: 17461
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)