Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F16
         (906 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    27   0.78 
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            24   5.5  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
 Frame = +1

Query: 697 PPPXKXXKKP-PPFXGGXXPQXXKKPXXPPPXTPPXPPXXXP 819
           PP      +P PP  GG  PQ    P  P P  P  PP   P
Sbjct: 200 PPRTGTPTQPQPPRPGGMYPQ---PPGVPMPMRPQMPPGAVP 238


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 778 PPPXTPPXPPXXXP 819
           PPP  PP PP   P
Sbjct: 581 PPPAPPPPPPMGPP 594



 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 769 PXXPPPXTPPXPPXXXP 819
           P   PP  PP PP   P
Sbjct: 577 PNAQPPPAPPPPPPMGP 593


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 452,604
Number of Sequences: 2352
Number of extensions: 5168
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 97987887
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)