Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F14
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.046
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.14 

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.1 bits (72), Expect = 0.046
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 704 PPPXPXXFFXXXXXPPPPPPP 766
           PPP P   F     PPPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 704 PPPXPXXFFXXXXXPPPPPPPXXXXG 781
           PPP P         PPPPPPP    G
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 704 PPPXPXXFFXXXXXPPPPPPP 766
           PPP P         PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.1 bits (62), Expect = 0.76
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +2

Query: 626 KKKKKXKXPXXPPXLLXLFXXFXXXXPPPXPXXFFXXXXXPPPPPPPXXXXG 781
           ++K   K P  PP  + +        P P P         PPPPPPP    G
Sbjct: 724 QQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGG---PPPPPPPPGVAG 772



 Score = 29.1 bits (62), Expect = 0.76
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 704 PPPXPXXFFXXXXXPPPPPPP 766
           PPP P         PPPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 704 PPPXPXXFFXXXXXPPPPPPPXXXXG 781
           PPP P         PPPPPP     G
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,941
Number of Sequences: 5004
Number of extensions: 15564
Number of successful extensions: 199
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)