Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_F12
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 158 6e-39
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 156 3e-38
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 142 5e-34
03_02_0761 - 10963045-10963482,10963713-10963889,10964151-109642... 33 0.41
01_06_0579 + 30379243-30379617 29 3.8
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 5.1
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 29 6.7
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 8.9
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671 28 8.9
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 158 bits (383), Expect = 6e-39
Identities = 83/161 (51%), Positives = 109/161 (67%), Gaps = 7/161 (4%)
Frame = +2
Query: 71 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 247
MGID + ++K +RT +S+D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 248 PISVSRLARHM--KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARI 409
P+S+ RL R M K P R + IAV+VGTVT+D R+Y++P M VAAL TE ARARI
Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120
Query: 410 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFWP 532
+ AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HF P
Sbjct: 121 INAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGP 161
Score = 44.0 bits (99), Expect = 2e-04
Identities = 20/27 (74%), Positives = 22/27 (81%), Gaps = 2/27 (7%)
Frame = +3
Query: 525 FGPAPGAPRSHTKPYVRTKGH--EKAR 599
FGPAPG P S+TKPYVR+KG EKAR
Sbjct: 159 FGPAPGVPHSNTKPYVRSKGRKFEKAR 185
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 156 bits (378), Expect = 3e-38
Identities = 81/153 (52%), Positives = 105/153 (68%), Gaps = 1/153 (0%)
Frame = +2
Query: 71 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 247
MGID + ++K +RT +S D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 248 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 427
P+S+ RLA+ M+ E IAV+VGTVT+D R+ +IPKM V AL TE ARARI+ AGGE
Sbjct: 61 PLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGE 119
Query: 428 ILTFDQLALRAPTGKKTVLVQGQRNAREAVRHF 526
LTFDQLALRAP G+ TVL++G +NAREAVRHF
Sbjct: 120 CLTFDQLALRAPLGENTVLLRGPKNAREAVRHF 152
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Frame = +3
Query: 525 FGPAPGAPRSHTKPYVRTKGH--EKAR 599
FG APG P SHTKPYVR+KG EKAR
Sbjct: 152 FGKAPGVPHSHTKPYVRSKGRKFEKAR 178
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 142 bits (343), Expect = 5e-34
Identities = 82/172 (47%), Positives = 106/172 (61%), Gaps = 18/172 (10%)
Frame = +2
Query: 71 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 247
MGID + ++K +RT KS D+ T + FN ++LRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 248 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 427
P+S+ RL R M+ +E IAV+VGTVT+D R+Y++P M VAAL TE ARARI+ GGE
Sbjct: 61 PLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGE 118
Query: 428 ILTFDQLALRAPTGKKT-----------------VLVQGQRNAREAVRHFWP 532
LTFDQLALRAP G+ T VL++G +NAREAV+HF P
Sbjct: 119 CLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGP 170
Score = 44.0 bits (99), Expect = 2e-04
Identities = 20/27 (74%), Positives = 22/27 (81%), Gaps = 2/27 (7%)
Frame = +3
Query: 525 FGPAPGAPRSHTKPYVRTKGH--EKAR 599
FGPAPG P S+TKPYVR+KG EKAR
Sbjct: 168 FGPAPGVPHSNTKPYVRSKGRKFEKAR 194
>03_02_0761 -
10963045-10963482,10963713-10963889,10964151-10964261,
10964982-10965227,10965571-10965630,10965729-10966034,
10966626-10966769,10966994-10967392
Length = 626
Score = 32.7 bits (71), Expect = 0.41
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 447 WLFVLRLARRQYWYKVSEMLVRQCVTFGPAPGAPR-SHTKPYVRTKGHEKAR 599
WL+ ++ R+Y + +E L+ QC+ + P G P + K Y + +KAR
Sbjct: 111 WLYRAKVHTRKYEFADAEKLLNQCIMYWPEDGRPYVALGKLYSKQSRFDKAR 162
>01_06_0579 + 30379243-30379617
Length = 124
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -1
Query: 350 CTVSRHL*LSPLPRQSNPHELASS 279
CT+S H SP+ R S+PH LASS
Sbjct: 11 CTISCH---SPMRRSSSPHRLASS 31
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 321 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 217
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 28.7 bits (61), Expect = 6.7
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 188 NAKFNQIVLRRLFMSR-INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 364
N K N VL L +S+ + P ++V L H + P +V+GT T+D + +
Sbjct: 21 NWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHL-LL 79
Query: 365 TVAALHVTEKARARILAAGGEI 430
AAL + + A AAGG +
Sbjct: 80 ADAALPLPPRLAAAAAAAGGAV 101
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 418 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 320
SS ++ SF + SS+RHL L+ + + CP
Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128
>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
Length = 502
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 625 KLDISTTTGLA-FSCPLVRT*GLV*ERGAPGAGPKVTHCLTSISLTLYQYC 476
KL + TTTG A F C + PG GP+ HCLT L ++++C
Sbjct: 280 KLRMVTTTGEAPFKCDACKE---------PGDGPRY-HCLTCEDLNMHKFC 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,925,112
Number of Sequences: 37544
Number of extensions: 449487
Number of successful extensions: 1233
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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