Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_F12
(905 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 180 8e-45
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 180 8e-45
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 180 8e-45
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 180 8e-45
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 177 3e-44
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 151 4e-36
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 180 bits (437), Expect = 8e-45
Identities = 89/152 (58%), Positives = 107/152 (70%)
Frame = +2
Query: 71 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 250
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 251 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 430
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 431 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHF 526
LTFDQLAL +P G TVL+ G R RE RHF
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHF 152
Score = 42.3 bits (95), Expect = 0.002
Identities = 19/27 (70%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Frame = +3
Query: 525 FGPAPGAPRSHTKPYVRTKGH--EKAR 599
FG APG P SHTKPYVR+KG E+AR
Sbjct: 152 FGKAPGTPHSHTKPYVRSKGRKFERAR 178
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 180 bits (437), Expect = 8e-45
Identities = 89/152 (58%), Positives = 107/152 (70%)
Frame = +2
Query: 71 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 250
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 251 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 430
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 431 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHF 526
LTFDQLAL +P G TVL+ G R RE RHF
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHF 152
Score = 42.3 bits (95), Expect = 0.002
Identities = 19/27 (70%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Frame = +3
Query: 525 FGPAPGAPRSHTKPYVRTKGH--EKAR 599
FG APG P SHTKPYVR+KG E+AR
Sbjct: 152 FGKAPGTPHSHTKPYVRSKGRKFERAR 178
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 180 bits (437), Expect = 8e-45
Identities = 89/152 (58%), Positives = 107/152 (70%)
Frame = +2
Query: 71 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 250
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 251 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 430
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 431 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHF 526
LTFDQLAL +P G TVL+ G R RE RHF
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHF 152
Score = 42.3 bits (95), Expect = 0.002
Identities = 19/27 (70%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Frame = +3
Query: 525 FGPAPGAPRSHTKPYVRTKGH--EKAR 599
FG APG P SHTKPYVR+KG E+AR
Sbjct: 152 FGKAPGTPHSHTKPYVRSKGRKFERAR 178
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 180 bits (437), Expect = 8e-45
Identities = 89/152 (58%), Positives = 107/152 (70%)
Frame = +2
Query: 71 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 250
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 251 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 430
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 431 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHF 526
LTFDQLAL +P G TVL+ G R RE RHF
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHF 152
Score = 42.3 bits (95), Expect = 0.002
Identities = 19/27 (70%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Frame = +3
Query: 525 FGPAPGAPRSHTKPYVRTKGH--EKAR 599
FG APG P SHTKPYVR+KG E+AR
Sbjct: 152 FGKAPGTPHSHTKPYVRSKGRKFERAR 178
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 177 bits (432), Expect = 3e-44
Identities = 88/152 (57%), Positives = 106/152 (69%)
Frame = +2
Query: 71 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 250
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 251 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 430
+ +SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LCLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 431 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHF 526
LTFDQLAL +P G TVL+ G R RE RHF
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHF 152
Score = 42.3 bits (95), Expect = 0.002
Identities = 19/27 (70%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Frame = +3
Query: 525 FGPAPGAPRSHTKPYVRTKGH--EKAR 599
FG APG P SHTKPYVR+KG E+AR
Sbjct: 152 FGKAPGTPHSHTKPYVRSKGRKFERAR 178
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 151 bits (365), Expect = 4e-36
Identities = 72/114 (63%), Positives = 89/114 (78%)
Frame = +2
Query: 185 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 364
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKL 75
Query: 365 TVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHF 526
V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE RHF
Sbjct: 76 KVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHF 129
Score = 42.3 bits (95), Expect = 0.002
Identities = 19/27 (70%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Frame = +3
Query: 525 FGPAPGAPRSHTKPYVRTKGH--EKAR 599
FG APG P SHTKPYVR+KG E+AR
Sbjct: 129 FGKAPGTPHSHTKPYVRSKGRKFERAR 155
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,708,422
Number of Sequences: 237096
Number of extensions: 2552501
Number of successful extensions: 4879
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4879
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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