Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_F11
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc... 177 2e-45
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni... 66 6e-12
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni... 55 1e-08
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 27 4.8
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 27 4.8
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 8.4
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 26 8.4
>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 177
Score = 177 bits (431), Expect = 2e-45
Identities = 85/129 (65%), Positives = 104/129 (80%), Gaps = 1/129 (0%)
Frame = +3
Query: 243 MNIRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKM 422
M+IR AR SDL MQ+CNL LPENYQ+KYY YH +SWP LSYVA D KG +VGYVLAKM
Sbjct: 1 MDIRPARISDLTGMQNCNLHNLPENYQLKYYLYHAISWPMLSYVATDPKGRVVGYVLAKM 60
Query: 423 EEDGEDN-RHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAAL 599
EE+ +D HGHITS++V RS+R LGLA++LM Q+ AMVE + AKY+SLHVRKSNRAA+
Sbjct: 61 EEEPKDGIPHGHITSVSVMRSYRHLGLAKRLMVQSQRAMVEVYGAKYMSLHVRKSNRAAI 120
Query: 600 NLYTNSLGF 626
+LY ++L F
Sbjct: 121 HLYRDTLQF 129
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 625 FKILEIEPKYYADGEXAYSMMRDLSAFAVD 714
F + IE KYYADGE AY+M +D S D
Sbjct: 129 FDVQGIESKYYADGEDAYAMHKDFSTLKFD 158
>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 66.1 bits (154), Expect = 6e-12
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
Frame = +3
Query: 261 RPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGH--IVGYVLAKMEEDG 434
+ +DL + + NL L E + + +Y + WP L V E + ++GY++ K E G
Sbjct: 8 KATDLFSFNNINLDPLTETFNISFYLSYLNKWPSLCVVQESDLSDPTLMGYIMGKSEGTG 67
Query: 435 EDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTN 614
++ H H+T++ V + RRLGLA+ +M+ + A +V L VR SN A++ Y
Sbjct: 68 KE-WHTHVTAITVAPNSRRLGLARTMMDYLE-TVGNSENAFFVDLFVRASNALAIDFY-K 124
Query: 615 SLGF*DFR 638
LG+ +R
Sbjct: 125 GLGYSVYR 132
>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 150
Score = 55.2 bits (127), Expect = 1e-08
Identities = 36/107 (33%), Positives = 53/107 (49%)
Frame = +3
Query: 306 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSH 485
L E Y Y Y WP+ S+VA D +G V+ K + G+I LA+ + +
Sbjct: 23 LSEPYSKYVYRYFVHQWPEFSFVALDND-RFIGAVICKQDVHRGTTLRGYIAMLAIVKEY 81
Query: 486 RRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGF 626
R G+A KL QASL +++ A+ + L N AA++ Y LGF
Sbjct: 82 RGQGIATKL-TQASLDVMKNRGAQEIVLETEVDNEAAMSFY-ERLGF 126
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.6 bits (56), Expect = 4.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 360 GAKKVHGRSNISSDSSLADTISC 292
G K VHG N++S +++D + C
Sbjct: 577 GGKAVHGLVNLASSRNVSDRVKC 599
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = -3
Query: 796 ITINQHXEIIADSDLIXXYLSHCCQFYYQLQKHSDLASWNTHXLHQHSTLAQF 638
+ ++ + + D L L ++++ L D A W+ H HQ S L F
Sbjct: 380 VVLSIYWPYLEDKLLKFSDLGDIFEYFFSLIHDCDYAIWSVHDEHQFSELLAF 432
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -2
Query: 455 VTMTIILTVLFHFCQNISNNMS 390
+ +I+LT+LF+F N+S+ M+
Sbjct: 278 IPFSIVLTILFYFDHNVSSVMA 299
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 8.4
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Frame = +3
Query: 366 SYVAEDEKGHIVGY---VLAKMEEDGEDNRHGHITSLAVKRSHRRLGLA-QKLMNQASLA 533
++V E + IVG E+D +D+ HG H R G+A Q++ N S
Sbjct: 558 AFVEEKNRYLIVGTSTSAFTSNEDDDDDDGHG----------HNRFGVAFQEVANMTSAT 607
Query: 534 M-VECFQAKYVSLHVRKSNRAALNLYTNSLGF 626
+ ++CF+A + + ++ L ++ SL F
Sbjct: 608 LQMDCFEASVI-----ECQKSDLGVFLESLSF 634
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,274
Number of Sequences: 5004
Number of extensions: 57644
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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