Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_F11
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227 186 3e-47
03_05_0805 - 27839576-27839667,27839763-27839823,27840082-278401... 77 3e-14
11_05_0016 - 18410889-18411104,18411326-18411381,18412883-184130... 56 5e-08
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550... 45 9e-05
06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812 40 0.004
01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739 38 0.008
02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467 31 0.94
04_04_0166 - 23250473-23250746,23251349-23252025 31 1.2
07_01_0119 - 908600-909592,909685-909885 30 2.2
03_06_0062 + 31384440-31384619,31384788-31384957,31385143-31385992 30 2.2
12_02_0774 - 23035853-23035900,23036027-23036875,23037732-23037905 29 5.0
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 29 5.0
>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
Length = 227
Score = 186 bits (452), Expect = 3e-47
Identities = 89/126 (70%), Positives = 101/126 (80%)
Frame = +3
Query: 249 IRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEE 428
IR A DL+ MQ CNL+CLPENYQMKYY YH LSWPQL +VAED G IVGYVLAKMEE
Sbjct: 4 IRQATIDDLLAMQACNLMCLPENYQMKYYLYHMLSWPQLLFVAEDYGGRIVGYVLAKMEE 63
Query: 429 DGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 608
D + HGHITSLAV RSHR+LGLA KLM+ A AM + F A+YVSLHVR+SNRAA NLY
Sbjct: 64 DPSEPCHGHITSLAVLRSHRKLGLATKLMSAAQAAMDQVFGAEYVSLHVRRSNRAAFNLY 123
Query: 609 TNSLGF 626
T++LG+
Sbjct: 124 TSTLGY 129
Score = 39.1 bits (87), Expect = 0.005
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +1
Query: 601 IFTQTLWGFKILEIEPKYYADGEXAYSMMRDL 696
++T TL G++I ++E KYYADGE AY M + L
Sbjct: 122 LYTSTL-GYQIHDVEAKYYADGEDAYDMRKPL 152
>03_05_0805 -
27839576-27839667,27839763-27839823,27840082-27840151,
27841167-27841299,27841928-27842018,27842097-27842174
Length = 174
Score = 76.6 bits (180), Expect = 3e-14
Identities = 42/123 (34%), Positives = 65/123 (52%)
Frame = +3
Query: 270 DLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRH 449
DL+ NL L E + M +Y + WP + A ++GY++ K+E GE + H
Sbjct: 11 DLLRFSSVNLDHLTETFNMSFYMTYMARWPDYFHAAVSPGDRVMGYIMGKVEGQGE-SWH 69
Query: 450 GHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGF* 629
GH+T+++V RR LA+KLMN + +A +V L VR SN A+ +Y LG+
Sbjct: 70 GHVTAVSVATEFRRQKLAKKLMNLLEEISDKMDKAYFVDLFVRASNMPAIRMY-EKLGYV 128
Query: 630 DFR 638
+R
Sbjct: 129 VYR 131
>11_05_0016 -
18410889-18411104,18411326-18411381,18412883-18413009,
18413113-18413307
Length = 197
Score = 55.6 bits (128), Expect = 5e-08
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Frame = +3
Query: 306 LPENYQMKYYFYHGLSWPQLSYVAEDEK-GHIVGYVLAKMEEDGEDNRHGHITSLAVKRS 482
L E Y + Y Y WPQL+++A D K G VG V+ KM E R G+I L V +
Sbjct: 43 LSEPYSIFTYRYFVYLWPQLTFLAFDPKDGKCVGTVVCKMGEHRGAFR-GYIAMLVVLKP 101
Query: 483 HRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGF 626
+R G+A +L+ ++ M+E + V+L +N+ AL LY LGF
Sbjct: 102 YRGRGIATELVTRSIRVMMES-GCEEVTLEAEVTNKGALALY-GRLGF 147
>03_02_0081 -
5506194-5506197,5506310-5507170,5507299-5507456,
5507549-5507740
Length = 404
Score = 44.8 bits (101), Expect = 9e-05
Identities = 25/63 (39%), Positives = 36/63 (57%)
Frame = +3
Query: 450 GHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGF* 629
G+I L V SHRR+GLA +++ + A E A+Y + KSN A+L L+T G+
Sbjct: 105 GYILGLRVAPSHRRMGLALRMVRRME-AWFERMGAEYAYMATDKSNEASLRLFTVRCGYS 163
Query: 630 DFR 638
FR
Sbjct: 164 KFR 166
>06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812
Length = 419
Score = 39.5 bits (88), Expect = 0.004
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Frame = +3
Query: 369 YVAEDEKGHIVGYVLA---KMEEDGEDNRH----GHITSLAVKRSHRRLGLAQKLMNQAS 527
Y E+EK +VG + A + G+ + ++ L V SHRRLG+ L+ +A
Sbjct: 100 YGEEEEKKKVVGVIKACVKTVSRGGKQEKPFVKVANLLGLRVSPSHRRLGIGTALVRRAE 159
Query: 528 LAMVECFQAKYVSLHVRKSNRAALNLYTNSLGF*DFR 638
V A++ ++ +SN A+L L+T G+ FR
Sbjct: 160 EWCV-ARGAEHATMATTESNAASLALFTGRFGYAPFR 195
>01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739
Length = 179
Score = 38.3 bits (85), Expect = 0.008
Identities = 31/122 (25%), Positives = 55/122 (45%)
Frame = +3
Query: 261 RPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGED 440
R ++M ++ N P Y KYY + ++ + S +A VG + ++E+
Sbjct: 30 RDKNVMQLKKLNTALFPVRYNEKYY-HDTIASKEFSKLAY-YSDICVGAIACRLEKKEGG 87
Query: 441 NRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSL 620
+I +L V +R LG+ KL+N + + E + LHV+ +N A+ Y
Sbjct: 88 AVCVYIMTLGVLAPYRSLGIGSKLLNHV-IDLCEKQNIPEIYLHVQTNNDDAIAFY-KKF 145
Query: 621 GF 626
GF
Sbjct: 146 GF 147
>02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467
Length = 421
Score = 31.5 bits (68), Expect = 0.94
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 456 ITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGF*DF 635
+ L V SHRRLG+A +L+ +A A Y ++ SN A+L L+ + F
Sbjct: 124 LLGLRVSPSHRRLGIATELVRRAE-EWCAARGAAYATMATTASNAASLALFQGRFKYALF 182
Query: 636 R 638
R
Sbjct: 183 R 183
>04_04_0166 - 23250473-23250746,23251349-23252025
Length = 316
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 453 HITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 608
+I ++ VK S RR G+ ++L+ +++ ++V LH R ++ N+Y
Sbjct: 214 YICNMTVKTSLRRRGIGKQLLKACEDLIIKMDAKRHVYLHCRIIDQVPFNMY 265
>07_01_0119 - 908600-909592,909685-909885
Length = 397
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 453 HITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGF*D 632
++ L V HRR G+ ++L+ + E A+Y + + N ++ L+T + G+
Sbjct: 104 YLLGLRVSPRHRRRGIGRRLVERMEEWFRE-MGAEYAYVATDRDNEPSVRLFTGACGYAK 162
Query: 633 FR 638
FR
Sbjct: 163 FR 164
>03_06_0062 + 31384440-31384619,31384788-31384957,31385143-31385992
Length = 399
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +3
Query: 453 HITSLAVKRSHRRLGLAQKLMNQASLAMVECFQ---AKYVSLHVRKSNRAALNLYTNSLG 623
+I L V +RR G+ +KL+ + M E F+ A+Y + + N A++ L+T G
Sbjct: 106 YILGLRVSPRYRRKGVGKKLVGR----MEEWFRQSGAEYSYMATEQDNEASVRLFTGRCG 161
Query: 624 F*DFR 638
+ FR
Sbjct: 162 YSKFR 166
>12_02_0774 - 23035853-23035900,23036027-23036875,23037732-23037905
Length = 356
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 429 DGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 608
DG+ G++ L V HRR G+ KL+ A A++V +N A+ L+
Sbjct: 86 DGDTVLAGYVLGLRVSPVHRRKGIGLKLVESVE-AWAARHGARHVVAAADAANAASRGLF 144
Query: 609 TNSLGF 626
G+
Sbjct: 145 VGRRGY 150
>11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 459 TSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLH-VRKSNRAALN 602
T + VKRS+ RLG+ ++ N+ S+ M+E S++ + K + LN
Sbjct: 854 TYVQVKRSNGRLGVYKEFSNEVSMLMLEADPQNATSIYNLHKDAKDKLN 902
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,773,854
Number of Sequences: 37544
Number of extensions: 344658
Number of successful extensions: 820
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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