Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_F11
(900 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047659-11|AAC04428.1| 182|Caenorhabditis elegans Hypothetical... 214 8e-56
AC024878-1|AAK85513.1| 173|Caenorhabditis elegans Hypothetical ... 79 3e-15
AF016450-12|AAB65989.1| 278|Caenorhabditis elegans Hypothetical... 57 2e-08
Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical pr... 38 0.013
Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical pr... 38 0.013
U00067-6|AAL08037.1| 167|Caenorhabditis elegans Hypothetical pr... 34 0.16
U23524-5|AAC46821.2| 252|Caenorhabditis elegans Hypothetical pr... 31 0.85
U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 29 4.5
J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 29 4.5
Z92812-6|CAB07280.1| 372|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z81070-4|CAB03003.2| 474|Caenorhabditis elegans Hypothetical pr... 28 7.9
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AF047659-11|AAC04428.1| 182|Caenorhabditis elegans Hypothetical
protein K07H8.3 protein.
Length = 182
Score = 214 bits (522), Expect = 8e-56
Identities = 98/128 (76%), Positives = 111/128 (86%)
Frame = +3
Query: 243 MNIRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKM 422
MNIRCAR DLM+MQ+ NL+CLPENYQMKYYFYH LSWPQLSY+AED KG++VGYVLAKM
Sbjct: 1 MNIRCARVDDLMSMQNANLMCLPENYQMKYYFYHALSWPQLSYIAEDHKGNVVGYVLAKM 60
Query: 423 EEDGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALN 602
EED + HGHITSLAVKRS+RRLGLA K+M+Q + AMVE + AKYVSLHVR SNRAALN
Sbjct: 61 EEDPGEEPHGHITSLAVKRSYRRLGLANKMMDQTARAMVETYNAKYVSLHVRVSNRAALN 120
Query: 603 LYTNSLGF 626
LY N+L F
Sbjct: 121 LYKNTLKF 128
Score = 44.8 bits (101), Expect = 9e-05
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +1
Query: 625 FKILEIEPKYYADGEXAYSMMRDLSAFAVDNKTD 726
F+I++ EPKYYADGE AY+M RDL+ +A + +
Sbjct: 128 FEIVDTEPKYYADGEDAYAMRRDLAKWAEERNIE 161
>AC024878-1|AAK85513.1| 173|Caenorhabditis elegans Hypothetical
protein Y97E10AL.3 protein.
Length = 173
Score = 79.4 bits (187), Expect = 3e-15
Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 4/130 (3%)
Frame = +3
Query: 261 RPSDLMNM---QHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEED 431
RP D+M+M + NL E Y ++Y ++ +++P+ VAE G I+ YV+ K+E
Sbjct: 5 RPFDVMDMFKFNNVNLDINTETYGFQFYLHYMMNYPEYYQVAEHPNGEIMAYVMGKIE-- 62
Query: 432 GED-NRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 608
G D N HGH+T+L+V + RRLGLA +M E +A +V L VR SN+ A+ LY
Sbjct: 63 GRDTNWHGHVTALSVAPNFRRLGLAAYMMEFLERTS-EARRAYFVDLFVRVSNKIAIELY 121
Query: 609 TNSLGF*DFR 638
LG+ +R
Sbjct: 122 -KKLGYVVYR 130
>AF016450-12|AAB65989.1| 278|Caenorhabditis elegans Hypothetical
protein B0238.10 protein.
Length = 278
Score = 56.8 bits (131), Expect = 2e-08
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Frame = +3
Query: 306 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHI-VGYVLAKMEEDGEDNRHGHITSLAVKRS 482
L E Y + Y Y +WP+ ++A D+ + +G VL K+E D G++ LAV S
Sbjct: 117 LSEPYSIYTYRYFLHNWPEYCFLAYDQTNNTYIGAVLCKLELDMYGRCKGYLAMLAVDES 176
Query: 483 HRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGF 626
RRLG+ +L+ +A AM + + L SN+ A LY+N LGF
Sbjct: 177 CRRLGIGTRLVRRALDAM-QSKGCDEIVLETEVSNKNAQRLYSN-LGF 222
>Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical
protein F30F8.10b protein.
Length = 215
Score = 37.5 bits (83), Expect = 0.013
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +3
Query: 441 NRH-GHITSLAVKRSHRRLGLAQKLMNQASLAMVE-CFQAKYVSLHVRKSNRAALNLY 608
N H +I S+AV + RRLGLA +L+N ++ + + V LHV +N AAL+ Y
Sbjct: 94 NAHVAYILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFY 151
>Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical
protein F30F8.10a protein.
Length = 242
Score = 37.5 bits (83), Expect = 0.013
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +3
Query: 441 NRH-GHITSLAVKRSHRRLGLAQKLMNQASLAMVE-CFQAKYVSLHVRKSNRAALNLY 608
N H +I S+AV + RRLGLA +L+N ++ + + V LHV +N AAL+ Y
Sbjct: 121 NAHVAYILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFY 178
>U00067-6|AAL08037.1| 167|Caenorhabditis elegans Hypothetical
protein F54E7.9 protein.
Length = 167
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +3
Query: 408 VLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSN 587
++A E+ E R +I S V HR GL LM+ + + + LHV+ SN
Sbjct: 71 IVAVKPENFETGRVLYIRSFGVHPRHREAGLGSFLMDFVD-EKGKLLKLPHAMLHVQTSN 129
Query: 588 RAALNLYTN 614
+ A+ Y N
Sbjct: 130 KTAIEFYKN 138
>U23524-5|AAC46821.2| 252|Caenorhabditis elegans Hypothetical
protein C29F5.2 protein.
Length = 252
Score = 31.5 bits (68), Expect = 0.85
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 273 LMNMQHCNLLCLPENYQMKYYFYHGLS 353
++++QHC L C NY +Y + GLS
Sbjct: 119 IVDLQHCTLPCKSINYNFHFYSFKGLS 145
>U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform a protein.
Length = 656
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 390 GH--IVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLM 515
GH IV Y+L K + NRHGH T L + ++G+ ++L+
Sbjct: 134 GHLDIVKYLLEKGADPHIPNRHGH-TCLMIASYRNKVGIVEELL 176
>J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein (
C.elegans fem-1 gene,complete cds. ).
Length = 656
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 390 GH--IVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLM 515
GH IV Y+L K + NRHGH T L + ++G+ ++L+
Sbjct: 134 GHLDIVKYLLEKGADPHIPNRHGH-TCLMIASYRNKVGIVEELL 176
>Z92812-6|CAB07280.1| 372|Caenorhabditis elegans Hypothetical
protein T03E6.6 protein.
Length = 372
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -1
Query: 156 VLEQIEIWINSTSKQC-TNFKI*LIGEV 76
+L+Q E W NST +C T F I LI EV
Sbjct: 109 ILQQNECWQNSTYLKCLTTFTINLIAEV 136
>Z81070-4|CAB03003.2| 474|Caenorhabditis elegans Hypothetical
protein F26E4.5 protein.
Length = 474
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 205 GCLTSDAGGVSDIPPSSSRTNRNLDKQHFQTMYQLQNLINW 83
G TS + V + P+ ++N +L K H +L+ + NW
Sbjct: 38 GASTSLSKSVEESAPNKDKSNSSLVKSHHVLKIKLKKITNW 78
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
protein F40H6.5 protein.
Length = 1288
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +3
Query: 294 NLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLA 470
NL+ + E Y+ +YY G + L + G+IVGY + ++ ++ +GH+ S A
Sbjct: 432 NLVPIRELYKDRYYVVAGNDYQYLIDDGYNITGNIVGYTV-DCKDSKDEFVYGHLPSYA 489
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,787,337
Number of Sequences: 27780
Number of extensions: 324280
Number of successful extensions: 815
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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