Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F08
         (773 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.36 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   6.3  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 297 PPPPPPPXXXXF 332
           PPPPPPP    F
Sbjct: 731 PPPPPPPRVESF 742



 Score = 23.0 bits (47), Expect(2) = 0.36
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 550 PPPPPPR 570
           PPPPPPR
Sbjct: 732 PPPPPPR 738



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 296 SPPPPPP 316
           +PPPPPP
Sbjct: 730 APPPPPP 736



 Score = 21.0 bits (42), Expect(2) = 0.36
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 445 PPPPPP 462
           PPPPPP
Sbjct: 731 PPPPPP 736


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 348 GGGGGGGXXXPPPP 389
           GGGGG G     PP
Sbjct: 524 GGGGGSGSGNNQPP 537


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.312    0.156    0.580 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,628
Number of Sequences: 336
Number of extensions: 4272
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)