Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F08
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 297  PPPPPPP 317
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 297  PPPPPPP 317
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 625  PPXPPPPP 648
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 551  PPPPPPXXGGG 583
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 446  PPPPPPXXXXG 478
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 535 PXXXXPPPPPPRXXG 579
           P    PPPPPP   G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 625 PPXPPPPPXXP 657
           PP P PPP  P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 296 SPPPPPP 316
           +PPPPPP
Sbjct: 342 APPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 550  PPPPPPR 570
            PPPPPPR
Sbjct: 1859 PPPPPPR 1865


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 554 PPPPPXXGG 580
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 500 GGGGGPPXPXXXXGGGGGG 444
           G  GG        GGGGGG
Sbjct: 33  GASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.156    0.580 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,610
Number of Sequences: 438
Number of extensions: 11080
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)