Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_F07
(1396 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 26 3.2
09_03_0145 - 12749288-12751510 30 5.0
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 25 5.8
03_01_0515 - 3864796-3865425 25 6.3
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 29 6.6
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 29 6.6
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 29 6.6
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 24 7.1
01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702... 24 7.5
12_02_0299 - 17051570-17052474,17053542-17053755 24 10.0
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 26.2 bits (55), Expect(2) = 6.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 3 PPXPPPPPXLXP 38
PP PPPPP + P
Sbjct: 602 PPPPPPPPPILP 613
Score = 25.0 bits (52), Expect(2) = 3.2
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = +3
Query: 6 PXPPPPPXLXPXPXXVXXXP 65
P PPPPP P P P
Sbjct: 762 PAPPPPPPQAPKPPGTVPPP 781
Score = 24.2 bits (50), Expect(2) = 6.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 6 PXPPPPPXLXP 38
P PPPPP L P
Sbjct: 689 PPPPPPPPLPP 699
Score = 23.8 bits (49), Expect(2) = 3.2
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 3 PPXPPPPPXL 32
PP PPPPP +
Sbjct: 747 PPAPPPPPLM 756
Score = 23.4 bits (48), Expect(2) = 6.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 3 PPXPPPPP 26
PP PPPPP
Sbjct: 665 PPPPPPPP 672
Score = 21.4 bits (43), Expect(2) = 6.9
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 12 PPPPPXLXPXP 44
PPPPP P P
Sbjct: 618 PPPPPPPPPLP 628
>09_03_0145 - 12749288-12751510
Length = 740
Score = 29.9 bits (64), Expect = 5.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 3 PPXPPPPPXLXPXPXXVXXXP 65
PP PPPPP + P P + P
Sbjct: 30 PPPPPPPPGIQPPPPALPGMP 50
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 24.6 bits (51), Expect(2) = 5.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 6 PXPPPPPXLXPXP 44
P PPPPP P P
Sbjct: 52 PPPPPPPPTQPAP 64
Score = 23.4 bits (48), Expect(2) = 5.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 3 PPXPPPPP 26
PP PPPPP
Sbjct: 49 PPRPPPPP 56
>03_01_0515 - 3864796-3865425
Length = 209
Score = 24.6 bits (51), Expect(2) = 6.3
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 6 PXPPPPPXLXPXP 44
P PPPPP P P
Sbjct: 89 PPPPPPPAASPPP 101
Score = 23.4 bits (48), Expect(2) = 6.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 3 PPXPPPPP 26
PP PPPPP
Sbjct: 86 PPLPPPPP 93
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 29.5 bits (63), Expect = 6.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 3 PPXPPPPPXLXPXP 44
PP PPPPP L P P
Sbjct: 30 PPHPPPPPPLEPAP 43
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 29.5 bits (63), Expect = 6.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 3 PPXPPPPPXLXPXP 44
PP PPPPP L P P
Sbjct: 87 PPPPPPPPPLSPTP 100
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 29.5 bits (63), Expect = 6.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 3 PPXPPPPPXLXPXP 44
PP PPPPP L P P
Sbjct: 326 PPPPPPPPFLPPFP 339
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 24.2 bits (50), Expect(2) = 7.1
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +3
Query: 12 PPPPPXLXPXPXXVXXXP 65
PPPPP P P + P
Sbjct: 404 PPPPPLYYPPPPDISPSP 421
Score = 23.4 bits (48), Expect(2) = 7.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 3 PPXPPPPP 26
PP PPPPP
Sbjct: 374 PPNPPPPP 381
>01_06_1827 +
40169001-40169263,40169358-40169472,40170090-40170201,
40170556-40170623,40170798-40170852,40170948-40171027,
40171811-40171924,40172178-40172296,40173064-40173181,
40173264-40173394,40173535-40173688,40173922-40174017
Length = 474
Score = 24.2 bits (50), Expect(2) = 7.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 6 PXPPPPPXLXP 38
P PPPPP L P
Sbjct: 40 PPPPPPPRLEP 50
Score = 23.4 bits (48), Expect(2) = 7.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 3 PPXPPPPP 26
PP PPPPP
Sbjct: 37 PPAPPPPP 44
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 23.8 bits (49), Expect(2) = 10.0
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 6 PXPPPPPXLXPXP 44
P PPPPP P P
Sbjct: 320 PPPPPPPPPPPPP 332
Score = 23.4 bits (48), Expect(2) = 10.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 3 PPXPPPPP 26
PP PPPPP
Sbjct: 286 PPSPPPPP 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,087,167
Number of Sequences: 37544
Number of extensions: 99229
Number of successful extensions: 3257
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2308
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4397198932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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